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Commits on Jun 11, 2003
  1. adding crsto's MAS5 parser

    allenday
    allenday committed Jun 11, 2003
    svn path=/bioperl-microarray/trunk/; revision=11821
Commits on Jun 3, 2003
  1. adding data files. big!

    allenday
    allenday committed Jun 3, 2003
    svn path=/bioperl-microarray/trunk/; revision=11820
  2. adding affy mas5 parser.

    allenday
    allenday committed Jun 3, 2003
    svn path=/bioperl-microarray/trunk/; revision=11819
Commits on May 19, 2003
  1. cel file fix for honxian@pcbi.upenn.edu

    allenday
    allenday committed May 19, 2003
    svn path=/bioperl-microarray/trunk/; revision=11818
Commits on Jan 29, 2003
  1. forgotten commits

    allenday
    allenday committed Jan 29, 2003
    svn path=/bioperl-microarray/trunk/; revision=11817
Commits on Jan 27, 2003
  1. *** empty log message ***

    allenday
    allenday committed Jan 27, 2003
    svn path=/bioperl-microarray/trunk/; revision=11816
Commits on Nov 8, 2002
  1. array.pm had been a bio::root::io.. why?? fixed. adding changes to al…

    allenday
    allenday committed Nov 8, 2002
    …low construction of an Array object from
    
    features.  this is for database freeze/thawing i'm trying to get working.
    
    svn path=/bioperl-microarray/trunk/; revision=11815
Commits on Nov 5, 2002
  1. next_array() was crufty, cleaner now. adding a test script to show it…

    allenday
    allenday committed Nov 5, 2002
    … can
    
    read concatenated CEL files.
    
    svn path=/bioperl-microarray/trunk/; revision=11814
Commits on Nov 4, 2002
  1. stray debug statements commented/removed

    allenday
    allenday committed Nov 4, 2002
    svn path=/bioperl-microarray/trunk/; revision=11813
  2. manifest, files about spotless features

    allenday
    allenday committed Nov 4, 2002
    svn path=/bioperl-microarray/trunk/; revision=11812
  3. moving input files

    allenday
    allenday committed Nov 4, 2002
    svn path=/bioperl-microarray/trunk/; revision=11811
  4. some spots on an affy array don't belong to any feature/featureset. now

    allenday
    allenday committed Nov 4, 2002
    considering these.
    
    svn path=/bioperl-microarray/trunk/; revision=11810
Commits on Oct 31, 2002
  1. cleaning up the interface classes, some doc fixes

    allenday
    allenday committed Oct 31, 2002
    svn path=/bioperl-microarray/trunk/; revision=11809
Commits on Oct 16, 2002
  1. placeholder for reading dChip tab-delimitted files.

    allenday
    allenday committed Oct 16, 2002
    svn path=/bioperl-microarray/trunk/; revision=11808
  2. mass renaming for MGED

    allenday
    allenday committed Oct 16, 2002
    svn path=/bioperl-microarray/trunk/; revision=11807
Commits on Oct 11, 2002
  1. added a test driver

    allenday
    allenday committed Oct 11, 2002
    svn path=/bioperl-microarray/trunk/; revision=11806
  2. except for parsing the DatHeader and other lines from the CEL (Data) …

    allenday
    allenday committed Oct 11, 2002
    …file,
    
    Affy parsing is working.
    
    svn path=/bioperl-microarray/trunk/; revision=11805
  3. using new changes to Bio::Root::IO to check filehandle mode.

    allenday
    allenday committed Oct 11, 2002
    moved Affy::Template to Affy::Array, changed some method names to reflect
    this fact.
    
    added methods for the data algorithm, algorithm parameters, creation
    date, and other info.  get/set methods, nothing fancy.
    
    svn path=/bioperl-microarray/trunk/; revision=11804
Commits on Oct 8, 2002
  1. doc changes, moving more methods around to the appropriate level in

    allenday
    allenday committed Oct 8, 2002
    hierarchy.  probably broke a bunch of stuff.
    
    svn path=/bioperl-microarray/trunk/; revision=11803
  2. Adding a layer of inheritance for Microarray::ProbeI from

    allenday
    allenday committed Oct 8, 2002
    Expression::ProbeI.  Affy-specific probe methods are now in
    Microarray::Affymetrix::Probe
    
    svn path=/bioperl-microarray/trunk/; revision=11802
  3. adding some new interface classes to formalize relationships.

    allenday
    allenday committed Oct 8, 2002
    adding documentation for some of the already existing classes.
    
    svn path=/bioperl-microarray/trunk/; revision=11801
  4. *** empty log message ***

    allenday
    allenday committed Oct 8, 2002
    svn path=/bioperl-microarray/trunk/; revision=11800
  5. it can now read/write affy files using MicroarrayIO

    allenday
    allenday committed Oct 8, 2002
    svn path=/bioperl-microarray/trunk/; revision=11799
  6. old files

    allenday
    allenday committed Oct 8, 2002
    svn path=/bioperl-microarray/trunk/; revision=11798
Commits on Oct 2, 2002
  1. it works now, still a bit slow, but using much less memory than befor…

    allenday
    allenday committed Oct 2, 2002
    …e. almost down to the
    
    PDL level of memory usage with Perl objects.
    
    svn path=/bioperl-microarray/trunk/; revision=11797
Commits on Oct 1, 2002
  1. not sure if it is totally working, just want to check it in to sync my

    allenday
    allenday committed Oct 1, 2002
    machines :)
    
    svn path=/bioperl-microarray/trunk/; revision=11796