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Commits on Apr 4, 2005
  1. *** empty log message ***

    allenday authored
    svn path=/bioperl-pedigree/trunk/; revision=12127
Commits on Aug 19, 2003
  1. we now output parseable dat (locus) files that may contain incorrect …

    allenday authored
    …data
    
    because we do not recalculate allele frequencies.  the dat file produced
    is just round-tripped from whatever the input was.
    
    svn path=/bioperl-pedigree/trunk/; revision=12120
  2. making changes related to inheritance from Bio::PopGen classes

    allenday authored
    svn path=/bioperl-pedigree/trunk/; revision=12119
Commits on Jun 25, 2003
  1. @hyphaltip

    order founders so test works on perl 5.6. and 5.8.0 nicely

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12117
  2. @hyphaltip

    all tests pass

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12114
Commits on Jun 24, 2003
  1. @hyphaltip

    IxHash is not required anymore

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12110
  2. @hyphaltip

    update to the new API and support the supplied FH

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12109
  3. @hyphaltip

    tests pass

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12108
  4. @hyphaltip

    tests pass

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12106
  5. personid -> person_id

    allenday authored
    svn path=/bioperl-pedigree/trunk/; revision=12103
  6. @hyphaltip

    these still need to be hand checked - but tests pass

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12100
  7. @hyphaltip

    fixed for new API, tests pass

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12099
  8. @hyphaltip

    no longer using Result - Bio::PopGen::Genotype has supplanted it

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12098
  9. @hyphaltip

    removing ped test - it is incorporated into PedIO.t test

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12096
  10. fixes for renamed methods

    allenday authored
    svn path=/bioperl-pedigree/trunk/; revision=12095
  11. @hyphaltip

    default group name is UNK instead of 'mock' - make changes for Result…

    hyphaltip authored
    … -> Genotype API change
    
    svn path=/bioperl-pedigree/trunk/; revision=12094
  12. adding data files and updating ped test script.

    allenday authored
    svn path=/bioperl-pedigree/trunk/; revision=12092
Commits on Jun 23, 2003
  1. @hyphaltip

    more cleanup to move towards common base with Bio::PopGen

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12089
  2. @hyphaltip

    1st step in merging pedigree and popgen objects -- tests don't pass y…

    hyphaltip authored
    …et, but making some changes
    
    svn path=/bioperl-pedigree/trunk/; revision=12087
Commits on Mar 10, 2003
  1. test files for ped io format

    allenday authored
    svn path=/bioperl-pedigree/trunk/; revision=12085
Commits on Nov 23, 2002
  1. @hyphaltip

    tests to come

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12082
Commits on Jul 10, 2002
  1. @hyphaltip

    remove Bio::Pedigree object in favor of Bio::Pedigree::Pedigree

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12079
  2. @hyphaltip

    tests are more intelligent about missing files - brought up to bioper…

    hyphaltip authored
    …l specs
    
    svn path=/bioperl-pedigree/trunk/; revision=12074
Commits on Jul 9, 2002
  1. @hyphaltip

    properly test for runnable png and Tie::IxHash (to be replaced I thin…

    hyphaltip authored
    …k) before assuming it
    
    svn path=/bioperl-pedigree/trunk/; revision=12073
Commits on Mar 28, 2002
  1. @hyphaltip

    updated to reflect new calling convention

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12067
Commits on Mar 21, 2002
  1. @hyphaltip

    Migrate to Bioperl 1.0

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12066
Commits on Sep 29, 2001
  1. @hyphaltip

    leftover changes, drawing code still has bugs and debugging msgs

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12065
Commits on Jul 9, 2001
  1. @hyphaltip

    ped input testing

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12058
  2. @hyphaltip

    test data

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12057
  3. @hyphaltip

    simple drawing code test

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12056
  4. @hyphaltip

    test that the object compiles

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12055
Commits on Jul 5, 2001
  1. @hyphaltip

    test to make sure GD graphics implementation actually writes a file

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12045
  2. @hyphaltip

    tests for new group functions

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12042
  3. @hyphaltip

    fixed error in test data

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12041
Commits on Jul 3, 2001
  1. @hyphaltip

    bring tests up to the new API spec for father not fatherid

    hyphaltip authored
    svn path=/bioperl-pedigree/trunk/; revision=12038
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