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Commits on Feb 21, 2009
  1. adding FEEDBACK:Support section to pod

    svn path=/bioperl-pipeline/trunk/; revision=15557
    maj committed Feb 21, 2009
Commits on Aug 17, 2006
  1. bug with the ranks of transformers

    svn path=/bioperl-pipeline/trunk/; revision=12904
    olivier committed Aug 17, 2006
Commits on Jul 11, 2006
  1. This is a variation of the setup_initial module in which we extract t…

    …he seq_region_ids.
    
    The difference is that we have an extra step of extracting the id from the seq_region slices.
    
    svn path=/bioperl-pipeline/trunk/; revision=12903
    olivier committed Jul 11, 2006
  2. Now this module can load BioPerl objects and not only a blast file

    svn path=/bioperl-pipeline/trunk/; revision=12902
    olivier committed Jul 11, 2006
  3. change run function to create_distance_matrix and create_tree functions

    svn path=/bioperl-pipeline/trunk/; revision=12901
    olivier committed Jul 11, 2006
  4. changes because Bio::Tools::Run::Alignment::StandAloneFasta has been

    modified
    
    svn path=/bioperl-pipeline/trunk/; revision=12900
    olivier committed Jul 11, 2006
  5. We can get/set the dbadaptor

    svn path=/bioperl-pipeline/trunk/; revision=12899
    olivier committed Jul 11, 2006
  6. small changes

    svn path=/bioperl-pipeline/trunk/; revision=12898
    olivier committed Jul 11, 2006
Commits on Jul 4, 2006
  1. Updated bug reporting

    svn path=/bioperl-pipeline/trunk/; revision=12897
    arareko committed Jul 4, 2006
  2. Updated bug reporting

    svn path=/bioperl-pipeline/trunk/; revision=12896
    arareko committed Jul 4, 2006
Commits on Jul 2, 2006
  1. Fixed spaces

    svn path=/bioperl-pipeline/trunk/; revision=12895
    arareko committed Jul 2, 2006
Commits on Jul 1, 2006
  1. Fixed spaces and URL's

    svn path=/bioperl-pipeline/trunk/; revision=12894
    arareko committed Jul 1, 2006
  2. Updating mailing lists URL

    svn path=/bioperl-pipeline/trunk/; revision=12893
    arareko committed Jul 1, 2006
Commits on May 24, 2006
  1. small bug

    svn path=/bioperl-pipeline/trunk/; revision=12892
    olivier committed May 24, 2006
  2. replace the runners by run method

    svn path=/bioperl-pipeline/trunk/; revision=12891
    olivier committed May 24, 2006
  3. *** empty log message ***

    svn path=/bioperl-pipeline/trunk/; revision=12890
    olivier committed May 24, 2006
  4. Added of descrption and num_identity for the HSP

    svn path=/bioperl-pipeline/trunk/; revision=12889
    olivier committed May 24, 2006
  5. Added comments

    svn path=/bioperl-pipeline/trunk/; revision=12888
    olivier committed May 24, 2006
  6. little modification

    svn path=/bioperl-pipeline/trunk/; revision=12887
    olivier committed May 24, 2006
Commits on Jan 27, 2006
  1. Hmmpfam replaced by Hmmer in the new version of bioperl

    svn path=/bioperl-pipeline/trunk/; revision=12886
    olivier committed Jan 27, 2006
Commits on Aug 26, 2004
  1. Added verbose flag

    svn path=/bioperl-pipeline/trunk/; revision=12885
    shawnh committed Aug 26, 2004
  2. First version of TK-based biopipe job viewer

    svn path=/bioperl-pipeline/trunk/; revision=12884
    shawnh committed Aug 26, 2004
  3. Fix xml schema definition

    svn path=/bioperl-pipeline/trunk/; revision=12883
    shawnh committed Aug 26, 2004
  4. Fixed test files so we don't have to pipe to /dev/null by setting ver…

    …bosity flag
    
    svn path=/bioperl-pipeline/trunk/; revision=12882
    shawnh committed Aug 26, 2004
  5. Added queue column to analysis table

    svn path=/bioperl-pipeline/trunk/; revision=12881
    shawnh committed Aug 26, 2004
  6. ADded kill functionality and various utility methods

    svn path=/bioperl-pipeline/trunk/; revision=12880
    shawnh committed Aug 26, 2004
  7. Added queue flag to analysis table

    svn path=/bioperl-pipeline/trunk/; revision=12879
    shawnh committed Aug 26, 2004
  8. fixes and added functionality for PBS, with kill jobs method

    svn path=/bioperl-pipeline/trunk/; revision=12878
    shawnh committed Aug 26, 2004
  9. remove unless string specified

    svn path=/bioperl-pipeline/trunk/; revision=12877
    shawnh committed Aug 26, 2004
  10. duplicate method rule_group_id remove

    svn path=/bioperl-pipeline/trunk/; revision=12876
    shawnh committed Aug 26, 2004
  11. added shutdown procedure for Manager. Currently all jobs in the queue…

    … that are not in the writing stage are killed. This is implemented for PBS scheduler. Will look at adding suspend feature as well
    
    svn path=/bioperl-pipeline/trunk/; revision=12875
    shawnh committed Aug 26, 2004
  12. fix to enable set hostname of node

    svn path=/bioperl-pipeline/trunk/; revision=12874
    shawnh committed Aug 26, 2004
  13. kill jobs method for graceful pipeline termination

    svn path=/bioperl-pipeline/trunk/; revision=12873
    shawnh committed Aug 26, 2004
  14. add queue flag so that we can specify the queue to send jobs based on…

    … analysis
    
    svn path=/bioperl-pipeline/trunk/; revision=12872
    shawnh committed Aug 26, 2004
  15. Using debug to control verbosity

    svn path=/bioperl-pipeline/trunk/; revision=12871
    shawnh committed Aug 26, 2004