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Tests for Bioperl Pipeline Different functionalities and bioperl pipleline objects are tested in different tests as follows. Input.t Input Handling(IoHandler with datahandlers to read in the input) Classes tested : IOHandler(fetching input), DataHandler, InputAdaptor, Input Output.t Output Handling ( IOHandler with datahandlers to write the output) Classes tested : IOHandler (writing output), DataHandler, AnalysisAdaptor Job.t Job (Fetching of jobs, running, creation of next job according to the rules) Classes tested : Job, JobAdaptoar, Rule, RuleAdaptor BatchSubmission.t BatchSubmission (Submitting the jobs through Batch submission interface) Classes tested : BatchSubmission, LSF Analysis.t Classes tested : Analysis, AnalysisAdaptor RunnableI, RunnableDB are implicitly tested throuh Job.t , a TestRunnable is used to test Job DataTypes is implicitly tested through Input.t BiopipeTestDB.conf need to be modified to point to the schema required to create the test database. The schema file also contains the test data required for the tests to run. Some Adaptor clases needed for testing are in SQL dir Runnables are not tested as yet. coming soon.. PipelineManager.pl is not tested.. havent figured out how to write a test case...