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#!/usr/bin/perl -w
# This is a Module::Build script for BioPerl-Run installation.
# See http://search.cpan.org/~kwilliams/Module-Build/lib/Module/Build.pm
use strict;
use warnings;
use Module::Build;
my $build = Module::Build->new(
dist_name => 'BioPerl-Run',
dist_version => '1.006900',
module_name => 'Bio::Run',
dist_author => 'BioPerl Team <bioperl-l@bioperl.org>',
dist_abstract => 'BioPerl-Run - wrapper toolkit',
license => 'perl',
config_requires => {
'Module::Build' => 0,
},
build_requires => {
'Bio::Root::Version' => '1.006900',
'Bio::Root::Test' => 0,
},
requires => {
'perl' => '5.6.1',
'Bio::Root::Version' => '1.006900',
'Bio::Root::Root' => 0,
},
recommends => {
'Algorithm::Diff' => 0, # generating consensus protein family descriptions: Bio::Tools::Run::TribeMCL
'IPC::Run' => 0, # Glimmer and Genemark application wrappers: Bio::Tools::Run::Glimmer Bio::Tools::Run::Genemark
'IO::String' => 0, # generating Bio::Tree::Tree from strings: Bio::Tools::Run::Phylo::Phylip::Consense
'XML::Twig' => 0, # processing XML data: Bio::Tools::Run::EMBOSSacd
'File::Sort' => 0, # BEDTools
'Config::Any' => 0, # MCS, Match
'SOAP::Lite' => 0.716, # A bug that affects SoapEU-unit.t tests was fixed in this version (many levels deep object throws error)
},
get_options => {
accept => { },
network => { },
install_scripts => { }
},
auto_features => {
Network => {
description => "Enable tests that need an internet connection",
requires => { 'LWP::UserAgent' => 0 }
}
},
dynamic_config => 1,
#create_makefile_pl => 'passthrough'
);
my $accept = $build->args->{accept};
# Optionally have script files installed.
if ($build->args('install_scripts') or $accept ? 0 : $build->y_n("Install scripts? y/n", 'n')) {
my $files = $build->_find_file_by_type('PLS', 'scripts');
my $script_build = File::Spec->catdir($build->blib, 'script');
my @tobp;
while (my ($file, $dest) = each %$files) {
$dest = 'bp_'.File::Basename::basename($dest);
$dest =~ s/PLS$/pl/;
$dest = File::Spec->catfile($script_build, $dest);
$build->copy_if_modified(from => $file, to => $dest);
push @tobp, $dest;
}
$build->script_files(\@tobp);
}
# Do network tests?
my $do_network_tests = 0;
if ($build->args('network')) {
$do_network_tests = $build->feature('Network');
}
elsif ($build->feature('Network')) {
$do_network_tests = $accept ? 0 : $build->y_n("Do you want to run tests that require connection to servers across the internet\n(likely to cause some failures)? y/n", 'n');
}
if ($do_network_tests) {
$build->notes(network => 1);
$build->log_info(" - will run internet-requiring tests\n");
my $use_email = $build->y_n("Do you want to run tests requiring a valid email address? y/n",'n');
if ($use_email) {
my $address = $build->prompt("Enter email address:");
$build->notes(email => $address);
}
}
else {
$build->notes(network => 0);
$build->log_info(" - will not run internet-requiring tests\n");
}
# Create the build script and exit
$build->create_build_script;
exit;
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