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turn of clustalw debugging

svn path=/bioperl-run/trunk/; revision=13022
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commit 0ffd3859089b362bbdcded040f48b3c8e5a06e2e 1 parent b6ddc46
@hyphaltip hyphaltip authored
Showing with 1 addition and 1 deletion.
  1. +1 −1  Bio/Tools/Run/Alignment/Clustalw.pm
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2  Bio/Tools/Run/Alignment/Clustalw.pm
@@ -570,7 +570,7 @@ sub _run {
chmod 0777, $infile1,$infile2;
$command = '-profile';
}
- print STDERR "Program ".$self->program."\n";
+ $self->debug( "Program ".$self->program."\n");
my $commandstring = $self->program." $command"." $instring".
" -output=gcg". " $param_string";
$self->debug( "clustal command = $commandstring");
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