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* small updates

svn path=/bioperl-run/trunk/; revision=15360
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1 parent 4f0afd1 commit b9efbb74f973fcd4449ad21a01348e54fa7d1dcf cjfields committed
Showing with 11 additions and 11 deletions.
  1. +7 −1 Changes
  3. +4 −7 INSTALL
8 Changes
@@ -4,12 +4,18 @@ Revision history for bioperl-run modules
Full details of changes between all versions are available online at:
+1.6.0 Release
+ o All Pise and Pise-related modules and scripts have been moved to the
+ new bioperl-pise repository. The Pise service is no longer available and
+ has been replaced by Mobyle. They have been retained as one can still
+ install a Pise server, and as these modules can possibly be used to create
+ a new BioPerl API for Mobyle.
1.5.2 Release in sync with bioperl core
o Several wrappers updated for newer versions of the programs.
1.5.1 Release in sync with bioperl core
o First major release in a while, so lots of things in this release
@@ -9,9 +9,6 @@ You can easily choose to install all of these during the normal installation
process. Note that the PPM version of the BioPerl packages always tries to
install all dependencies.
-The DBD::mysql, DB_File and XML::Parser modules require other applications or
-databases: MySQL, Berkeley DB, and expat respectively.
NB: This list of packages is not authoritative. See the 'requires',
'build_requires' and 'recommends' sections of Build.PL instead.
@@ -2,11 +2,10 @@
bioperl-run INSTALLATION
You need at least the corresponding version of Bioperl. Since this
-is bioperl-run 1.5.2, you will need bioperl 1.5.2.
+is BioPerl-run 1.6, you will need BioPerl 1.6.
@@ -31,11 +30,11 @@ Find the name of the bioperl-run version you want:
cpan>d /bioperl-run/
Database was generated on Mon, 20 Nov 2006 05:24:36 GMT
- Distribution S/SE/SENDU/bioperl-run-1.5.2_100.tar.gz
+ Distribution C/CJ/CJFIELDS/BioPerl-run-1.5.9_1.tar.gz
Now install:
- cpan>install S/SE/SENDU/bioperl-run-1.5.2_100.tar.gz
+ cpan>install C/CJ/CJFIELDS/BioPerl-run-1.5.9_1.tar.gz
If you've installed everything perfectly then you may pass all the tests
run in the './Build test' phase.
@@ -47,12 +46,11 @@ your usage of bioperl-run.
If you decide that the failed tests will not affect how you intend to use
bioperl-run and you'd like to install anyway do:
- cpan>force install S/SE/SENDU/bioperl-run-1.5.2_100.tar.gz
+ cpan>force install C/CJ/CJFIELDS/BioPerl-run-1.5.9_1.tar.gz
This is what most experienced Bioperl users would do. However, if you're
concerned about a failed test and need assistance or advice then contact
@@ -77,7 +75,6 @@ following commands:
NOTE: many tests will be skipped without the necessary environment
variables set to tell Bioperl where your programs are installed.
The following page on the BioPerl website has up-to-date

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