Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
Browse files

bugzilla -> redmine

  • Loading branch information...
commit d1b5491c9c57e5988681d4bb6aafc30a6269b47b 1 parent bdfba8c
@hyphaltip hyphaltip authored
Showing with 123 additions and 123 deletions.
  1. +1 −1  lib/Bio/DB/ESoap.pm
  2. +1 −1  lib/Bio/DB/ESoap/WSDL.pm
  3. +1 −1  lib/Bio/DB/SoapEUtilities.pm
  4. +1 −1  lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
  5. +1 −1  lib/Bio/DB/SoapEUtilities/FetchAdaptor.pm
  6. +1 −1  lib/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
  7. +1 −1  lib/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
  8. +1 −1  lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
  9. +1 −1  lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm
  10. +1 −1  lib/Bio/DB/SoapEUtilities/Result.pm
  11. +1 −1  lib/Bio/Factory/EMBOSS.pm
  12. +1 −1  lib/Bio/Installer/Clustalw.pm
  13. +1 −1  lib/Bio/Installer/EMBOSS.pm
  14. +1 −1  lib/Bio/Installer/Generic.pm
  15. +1 −1  lib/Bio/Installer/Hyphy.pm
  16. +1 −1  lib/Bio/Installer/Muscle.pm
  17. +1 −1  lib/Bio/Installer/PAML.pm
  18. +1 −1  lib/Bio/Installer/Probcons.pm
  19. +1 −1  lib/Bio/Installer/SLR.pm
  20. +1 −1  lib/Bio/Installer/TCoffee.pm
  21. +1 −1  lib/Bio/Tools/Run/Alignment/Amap.pm
  22. +1 −1  lib/Bio/Tools/Run/Alignment/Blat.pm
  23. +1 −1  lib/Bio/Tools/Run/Alignment/Clustalw.pm
  24. +1 −1  lib/Bio/Tools/Run/Alignment/DBA.pm
  25. +1 −1  lib/Bio/Tools/Run/Alignment/Exonerate.pm
  26. +1 −1  lib/Bio/Tools/Run/Alignment/Gmap.pm
  27. +1 −1  lib/Bio/Tools/Run/Alignment/Kalign.pm
  28. +1 −1  lib/Bio/Tools/Run/Alignment/Lagan.pm
  29. +1 −1  lib/Bio/Tools/Run/Alignment/MAFFT.pm
  30. +1 −1  lib/Bio/Tools/Run/Alignment/Muscle.pm
  31. +1 −1  lib/Bio/Tools/Run/Alignment/Pal2Nal.pm
  32. +1 −1  lib/Bio/Tools/Run/Alignment/Probalign.pm
  33. +1 −1  lib/Bio/Tools/Run/Alignment/Probcons.pm
  34. +1 −1  lib/Bio/Tools/Run/Alignment/Proda.pm
  35. +1 −1  lib/Bio/Tools/Run/Alignment/Sim4.pm
  36. +1 −1  lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm
  37. +1 −1  lib/Bio/Tools/Run/Alignment/TCoffee.pm
  38. +1 −1  lib/Bio/Tools/Run/Analysis.pm
  39. +1 −1  lib/Bio/Tools/Run/Analysis/soap.pm
  40. +1 −1  lib/Bio/Tools/Run/AnalysisFactory.pm
  41. +1 −1  lib/Bio/Tools/Run/AnalysisFactory/soap.pm
  42. +1 −1  lib/Bio/Tools/Run/AssemblerBase.pm
  43. +1 −1  lib/Bio/Tools/Run/BEDTools.pm
  44. +1 −1  lib/Bio/Tools/Run/BEDTools/Config.pm
  45. +1 −1  lib/Bio/Tools/Run/BWA.pm
  46. +1 −1  lib/Bio/Tools/Run/BWA/Config.pm
  47. +1 −1  lib/Bio/Tools/Run/BlastPlus.pm
  48. +1 −1  lib/Bio/Tools/Run/Bowtie.pm
  49. +1 −1  lib/Bio/Tools/Run/Bowtie/Config.pm
  50. +1 −1  lib/Bio/Tools/Run/Cap3.pm
  51. +1 −1  lib/Bio/Tools/Run/Coil.pm
  52. +1 −1  lib/Bio/Tools/Run/EMBOSSApplication.pm
  53. +1 −1  lib/Bio/Tools/Run/EMBOSSacd.pm
  54. +1 −1  lib/Bio/Tools/Run/ERPIN.pm
  55. +1 −1  lib/Bio/Tools/Run/Ensembl.pm
  56. +1 −1  lib/Bio/Tools/Run/Eponine.pm
  57. +1 −1  lib/Bio/Tools/Run/FootPrinter.pm
  58. +1 −1  lib/Bio/Tools/Run/Genemark.pm
  59. +1 −1  lib/Bio/Tools/Run/Genewise.pm
  60. +1 −1  lib/Bio/Tools/Run/Genscan.pm
  61. +1 −1  lib/Bio/Tools/Run/Glimmer.pm
  62. +1 −1  lib/Bio/Tools/Run/Hmmer.pm
  63. +1 −1  lib/Bio/Tools/Run/Infernal.pm
  64. +1 −1  lib/Bio/Tools/Run/MCS.pm
  65. +1 −1  lib/Bio/Tools/Run/Maq.pm
  66. +1 −1  lib/Bio/Tools/Run/Maq/Config.pm
  67. +1 −1  lib/Bio/Tools/Run/Match.pm
  68. +1 −1  lib/Bio/Tools/Run/Mdust.pm
  69. +1 −1  lib/Bio/Tools/Run/Meme.pm
  70. +1 −1  lib/Bio/Tools/Run/Minimo.pm
  71. +1 −1  lib/Bio/Tools/Run/Newbler.pm
  72. +1 −1  lib/Bio/Tools/Run/Phrap.pm
  73. +1 −1  lib/Bio/Tools/Run/Phylo/Gerp.pm
  74. +1 −1  lib/Bio/Tools/Run/Phylo/Gumby.pm
  75. +1 −1  lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm
  76. +1 −1  lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
  77. +1 −1  lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
  78. +1 −1  lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm
  79. +1 −1  lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
  80. +1 −1  lib/Bio/Tools/Run/Phylo/LVB.pm
  81. +1 −1  lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
  82. +1 −1  lib/Bio/Tools/Run/Phylo/Njtree/Best.pm
  83. +1 −1  lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
  84. +1 −1  lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
  85. +1 −1  lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
  86. +1 −1  lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
  87. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/Base.pm
  88. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm
  89. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
  90. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
  91. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
  92. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
  93. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
  94. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
  95. +1 −1  lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
  96. +1 −1  lib/Bio/Tools/Run/Phylo/PhyloBase.pm
  97. +1 −1  lib/Bio/Tools/Run/Phylo/Phyml.pm
  98. +1 −1  lib/Bio/Tools/Run/Phylo/QuickTree.pm
  99. +1 −1  lib/Bio/Tools/Run/Phylo/SLR.pm
  100. +1 −1  lib/Bio/Tools/Run/Phylo/Semphy.pm
  101. +1 −1  lib/Bio/Tools/Run/Primate.pm
  102. +1 −1  lib/Bio/Tools/Run/Primer3.pm
  103. +1 −1  lib/Bio/Tools/Run/Prints.pm
  104. +1 −1  lib/Bio/Tools/Run/Profile.pm
  105. +1 −1  lib/Bio/Tools/Run/Promoterwise.pm
  106. +1 −1  lib/Bio/Tools/Run/Pseudowise.pm
  107. +1 −1  lib/Bio/Tools/Run/RNAMotif.pm
  108. +1 −1  lib/Bio/Tools/Run/RepeatMasker.pm
  109. +1 −1  lib/Bio/Tools/Run/Samtools.pm
  110. +1 −1  lib/Bio/Tools/Run/Samtools/Config.pm
  111. +1 −1  lib/Bio/Tools/Run/Seg.pm
  112. +1 −1  lib/Bio/Tools/Run/Signalp.pm
  113. +1 −1  lib/Bio/Tools/Run/Simprot.pm
  114. +1 −1  lib/Bio/Tools/Run/StandAloneBlastPlus.pm
  115. +1 −1  lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm
  116. +1 −1  lib/Bio/Tools/Run/TigrAssembler.pm
  117. +1 −1  lib/Bio/Tools/Run/Tmhmm.pm
  118. +1 −1  lib/Bio/Tools/Run/TribeMCL.pm
  119. +1 −1  lib/Bio/Tools/Run/Vista.pm
  120. +1 −1  lib/Bio/Tools/Run/tRNAscanSE.pm
  121. +1 −1  scripts/multi_hmmsearch.PLS
  122. +1 −1  scripts/panalysis.PLS
  123. +1 −1  scripts/papplmaker.PLS
View
2  lib/Bio/DB/ESoap.pm
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/ESoap/WSDL.pm
@@ -102,7 +102,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities.pm
@@ -401,7 +401,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities/DocSumAdaptor.pm
@@ -65,7 +65,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities/FetchAdaptor.pm
@@ -77,7 +77,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm
@@ -79,7 +79,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm
@@ -68,7 +68,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities/GQueryAdaptor.pm
@@ -70,7 +70,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities/LinkAdaptor.pm
@@ -73,7 +73,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/DB/SoapEUtilities/Result.pm
@@ -190,7 +190,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Factory/EMBOSS.pm
@@ -86,7 +86,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
View
2  lib/Bio/Installer/Clustalw.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/EMBOSS.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/Generic.pm
@@ -50,7 +50,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/Hyphy.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.bioperl.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/Muscle.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.bioperl.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/PAML.pm
@@ -50,7 +50,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/Probcons.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/SLR.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.bioperl.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Installer/TCoffee.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Alignment/Amap.pm
@@ -125,7 +125,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Alignment/Blat.pm
@@ -75,7 +75,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/Alignment/Clustalw.pm
@@ -337,7 +337,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Peter Schattner
View
2  lib/Bio/Tools/Run/Alignment/DBA.pm
@@ -83,7 +83,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Alignment/Exonerate.pm
@@ -79,7 +79,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Alignment/Gmap.pm
@@ -63,7 +63,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - George Hartzell
View
2  lib/Bio/Tools/Run/Alignment/Kalign.pm
@@ -95,7 +95,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Alignment/Lagan.pm
@@ -113,7 +113,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Stephen Montgomery
View
2  lib/Bio/Tools/Run/Alignment/MAFFT.pm
@@ -53,7 +53,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Alignment/Muscle.pm
@@ -93,7 +93,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Alignment/Pal2Nal.pm
@@ -95,7 +95,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Alignment/Probalign.pm
@@ -99,7 +99,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Alignment/Probcons.pm
@@ -121,7 +121,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Alignment/Proda.pm
@@ -99,7 +99,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Alignment/Sim4.pm
@@ -80,7 +80,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm
@@ -103,7 +103,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Tiequan Zhang
View
2  lib/Bio/Tools/Run/Alignment/TCoffee.pm
@@ -513,7 +513,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich, Peter Schattner
View
2  lib/Bio/Tools/Run/Analysis.pm
@@ -171,7 +171,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/Analysis/soap.pm
@@ -59,7 +59,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/AnalysisFactory.pm
@@ -107,7 +107,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/AnalysisFactory/soap.pm
@@ -56,7 +56,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/AssemblerBase.pm
@@ -57,7 +57,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Florent Angly
View
2  lib/Bio/Tools/Run/BEDTools.pm
@@ -146,7 +146,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Dan Kortschak
View
2  lib/Bio/Tools/Run/BEDTools/Config.pm
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Dan Kortschak
View
2  lib/Bio/Tools/Run/BWA.pm
@@ -155,7 +155,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/BWA/Config.pm
@@ -54,7 +54,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/BlastPlus.pm
@@ -52,7 +52,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/Bowtie.pm
@@ -157,7 +157,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Dan Kortschak
View
2  lib/Bio/Tools/Run/Bowtie/Config.pm
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Dan Kortschak
View
2  lib/Bio/Tools/Run/Cap3.pm
@@ -64,7 +64,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
View
2  lib/Bio/Tools/Run/Coil.pm
@@ -71,7 +71,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHORS
View
2  lib/Bio/Tools/Run/EMBOSSApplication.pm
@@ -85,7 +85,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
View
2  lib/Bio/Tools/Run/EMBOSSacd.pm
@@ -96,7 +96,7 @@ report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
View
2  lib/Bio/Tools/Run/ERPIN.pm
@@ -91,7 +91,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Chris Fields
View
2  lib/Bio/Tools/Run/Ensembl.pm
@@ -67,7 +67,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Eponine.pm
@@ -78,7 +78,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/FootPrinter.pm
@@ -150,7 +150,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Genemark.pm
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark Johnson
View
2  lib/Bio/Tools/Run/Genewise.pm
@@ -80,7 +80,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - FUGU Student Intern
View
2  lib/Bio/Tools/Run/Genscan.pm
@@ -60,7 +60,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Bala
View
2  lib/Bio/Tools/Run/Glimmer.pm
@@ -91,7 +91,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark Johnson
View
2  lib/Bio/Tools/Run/Hmmer.pm
@@ -90,7 +90,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Infernal.pm
@@ -122,7 +122,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Chris Fields
View
2  lib/Bio/Tools/Run/MCS.pm
@@ -110,7 +110,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Maq.pm
@@ -173,7 +173,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/Maq/Config.pm
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/Match.pm
@@ -95,7 +95,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Mdust.pm
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/Meme.pm
@@ -73,7 +73,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Minimo.pm
@@ -68,7 +68,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Florent E Angly
View
2  lib/Bio/Tools/Run/Newbler.pm
@@ -67,7 +67,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Florent E Angly
View
2  lib/Bio/Tools/Run/Phrap.pm
@@ -74,7 +74,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Phylo/Gerp.pm
@@ -103,7 +103,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Phylo/Gumby.pm
@@ -119,7 +119,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm
@@ -54,7 +54,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm
@@ -73,7 +73,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm
@@ -72,7 +72,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm
@@ -73,7 +73,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm
@@ -71,7 +71,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Phylo/LVB.pm
@@ -72,7 +72,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 PARAMETERS FOR LVB COMPUTATION
View
2  lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
@@ -147,7 +147,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Phylo/Njtree/Best.pm
@@ -92,7 +92,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
@@ -147,7 +147,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
@@ -73,7 +73,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm
@@ -116,7 +116,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm
@@ -90,7 +90,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Phylo/Phylip/Base.pm
@@ -60,7 +60,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm
@@ -181,7 +181,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
@@ -56,7 +56,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
@@ -68,7 +68,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Jason Stajich
View
2  lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
@@ -185,7 +185,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
@@ -50,7 +50,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
@@ -214,7 +214,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
@@ -123,7 +123,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
@@ -159,7 +159,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Phylo/PhyloBase.pm
@@ -56,7 +56,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Phylo/Phyml.pm
@@ -132,7 +132,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Heikki Lehvaslaiho
View
2  lib/Bio/Tools/Run/Phylo/QuickTree.pm
@@ -87,7 +87,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Phylo/SLR.pm
@@ -95,7 +95,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/Phylo/Semphy.pm
@@ -103,7 +103,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Sendu Bala
View
2  lib/Bio/Tools/Run/Primate.pm
@@ -64,7 +64,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Primer3.pm
@@ -116,7 +116,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/Prints.pm
@@ -51,7 +51,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Bala
View
2  lib/Bio/Tools/Run/Profile.pm
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Balamurugan Kumarasamy
View
2  lib/Bio/Tools/Run/Promoterwise.pm
@@ -79,7 +79,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Pseudowise.pm
@@ -57,7 +57,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Kiran
View
2  lib/Bio/Tools/Run/RNAMotif.pm
@@ -115,7 +115,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Chris Fields
View
2  lib/Bio/Tools/Run/RepeatMasker.pm
@@ -92,7 +92,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Samtools.pm
@@ -126,7 +126,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/Samtools/Config.pm
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/Seg.pm
@@ -53,7 +53,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Bala
View
2  lib/Bio/Tools/Run/Signalp.pm
@@ -52,7 +52,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/Simprot.pm
@@ -90,7 +90,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Albert Vilella
View
2  lib/Bio/Tools/Run/StandAloneBlastPlus.pm
@@ -394,7 +394,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm
@@ -143,7 +143,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark A. Jensen
View
2  lib/Bio/Tools/Run/TigrAssembler.pm
@@ -93,7 +93,7 @@ with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Florent E Angly
View
2  lib/Bio/Tools/Run/Tmhmm.pm
@@ -50,7 +50,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Bala
View
2  lib/Bio/Tools/Run/TribeMCL.pm
@@ -138,7 +138,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Shawn Hoon
View
2  lib/Bio/Tools/Run/Vista.pm
@@ -117,7 +117,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  lib/Bio/Tools/Run/tRNAscanSE.pm
@@ -61,7 +61,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR - Mark Johnson
View
2  scripts/multi_hmmsearch.PLS
@@ -47,7 +47,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  scripts/panalysis.PLS
@@ -654,7 +654,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
View
2  scripts/papplmaker.PLS
@@ -456,7 +456,7 @@ Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via the
web:
- http://bugzilla.open-bio.org/
+ http://redmine.open-bio.org/projects/bioperl/
=head1 AUTHOR
Please sign in to comment.
Something went wrong with that request. Please try again.