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skip msg updated due to clustal 1.81 bug

svn path=/bioperl-run/trunk/; revision=12996
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commit 7ce730b8c59bc08e980f711508e7872e76fa4153 1 parent 48c855e
Jason Stajich authored December 14, 2001

Showing 1 changed file with 2 additions and 2 deletions. Show diff stats Hide diff stats

  1. 4  t/Clustalw.t
4  t/Clustalw.t
@@ -86,7 +86,7 @@ my $str2 = Bio::AlignIO->new(-file=> Bio::Root::IO->catfile("t","data","cysprot1
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 my $aln2 = $str2->next_aln();
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 $aln = $factory->profile_align($aln1,$aln2);
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-skip(1,1);
  89
+skip("skipping due to clustalw 1.81 bug",1);
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 #ok($aln->get_seq_by_pos(2)->get_nse, 'CATH_HUMAN/1-335', 
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 #   "failed clustalw profile alignment using SimpleAlign input. \nThere is known bug in ClustalW 1.81 and before causing this test to fail.");
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@@ -95,6 +95,6 @@ $aln1 = $str1->next_aln();
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 $str2 = Bio::SeqIO->new(-file=> Bio::Root::IO->catfile("t","data","cysprot1b.fa"));
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 my $seq = $str2->next_seq();
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 $aln = $factory->profile_align($aln1,$seq);
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-skip(1,1);
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+skip("skipping due to clustalw 1.81 bug",1);
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 #ok ($aln->get_seq_by_pos(2)->get_nse,  'CATH_HUMAN/1-335', 
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 #    "failed adding new sequence to alignment \nThere is known bug in ClustalW 1.81 and before causing this test to fail.");

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