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Commits on Jun 2, 2004
  1. get rid of deprecation warning

    hyphaltip committed Jun 2, 2004
    svn path=/bioperl-run/trunk/; revision=13534
Commits on May 28, 2004
  1. Fixed truncation bug

    mlogghe committed May 28, 2004
    svn path=/bioperl-run/trunk/; revision=13533
Commits on May 14, 2004
  1. small docu fixes

    hyphaltip committed May 14, 2004
    svn path=/bioperl-run/trunk/; revision=13532
  2. more, better tests for the new implementation for tree/bootstrap -- s…

    hyphaltip committed May 14, 2004
    …till some things to fix
    
    svn path=/bioperl-run/trunk/; revision=13531
  3. Nathan's version of the module

    bosborne committed May 14, 2004
    svn path=/bioperl-run/trunk/; revision=13530
Commits on May 13, 2004
  1. Michael's patch

    bosborne committed May 13, 2004
    svn path=/bioperl-run/trunk/; revision=13529
Commits on Mar 26, 2004
  1. allow more than one references to be selected

    shawnh committed Mar 26, 2004
    svn path=/bioperl-run/trunk/; revision=13528
Commits on Mar 15, 2004
  1. changed name of file installer.PLS to bioperl_application_installer.PLS

    avilella committed Mar 15, 2004
    svn path=/bioperl-run/trunk/; revision=13527
Commits on Mar 10, 2004
  1. added

    avilella committed Mar 10, 2004
    svn path=/bioperl-run/trunk/; revision=13526
  2. adding class

    avilella committed Mar 10, 2004
    svn path=/bioperl-run/trunk/; revision=13525
  3. adding installer.PLS

    avilella committed Mar 10, 2004
    svn path=/bioperl-run/trunk/; revision=13524
Commits on Mar 5, 2004
  1. Adding null matrix capability and score_ascii

    avilella committed Mar 5, 2004
    svn path=/bioperl-run/trunk/; revision=13523
Commits on Mar 3, 2004
  1. more document

    juguang committed Mar 3, 2004
    svn path=/bioperl-run/trunk/; revision=13522
Commits on Mar 1, 2004
  1. SDI in Forester package. it should be announced that you need to modi…

    juguang committed Mar 1, 2004
    …fy the source code of SDI to stop the popup window, if you only need the output file of it, before using this module
    
    svn path=/bioperl-run/trunk/; revision=13521
  2. proposed fundamental classes for other specific classes

    juguang committed Mar 1, 2004
    svn path=/bioperl-run/trunk/; revision=13520
  3. previous commit on this module by mistaken. reverted in this commit

    juguang committed Mar 1, 2004
    svn path=/bioperl-run/trunk/; revision=13519
  4. initial commit

    juguang committed Mar 1, 2004
    svn path=/bioperl-run/trunk/; revision=13518
Commits on Feb 20, 2004
  1. allow 0 value attributes per Susan Miller's bug report

    hyphaltip committed Feb 20, 2004
    svn path=/bioperl-run/trunk/; revision=13517
Commits on Feb 12, 2004
  1. add Juguang

    juguang committed Feb 12, 2004
    svn path=/bioperl-run/trunk/; revision=13516
Commits on Feb 5, 2004
  1. adding Daniel's LVB wrapper

    hyphaltip committed Feb 5, 2004
    svn path=/bioperl-run/trunk/; revision=13515
Commits on Jan 29, 2004
  1. Changed Bio::Tools::Run::Primer3 to allow get/set of program name and…

    redwards committed Jan 29, 2004
    … directory
    
    svn path=/bioperl-run/trunk/; revision=13514
Commits on Jan 2, 2004
  1. docfix, an array of genes can be returned

    hyphaltip committed Jan 2, 2004
    svn path=/bioperl-run/trunk/; revision=13513
Commits on Dec 30, 2003
  1. docu fix

    hyphaltip committed Dec 30, 2003
    svn path=/bioperl-run/trunk/; revision=13512
Commits on Dec 18, 2003
  1. mfold version change (3.1.2)

    letondal committed Dec 18, 2003
    svn path=/bioperl-run/trunk/; revision=13511
Commits on Dec 17, 2003
  1. stupid jason - it saves a syscall

    hyphaltip committed Dec 17, 2003
    svn path=/bioperl-run/trunk/; revision=13510
  2. what is that underscore in there for?

    hyphaltip committed Dec 17, 2003
    svn path=/bioperl-run/trunk/; revision=13509
  3. catfile not catdir

    hyphaltip committed Dec 17, 2003
    svn path=/bioperl-run/trunk/; revision=13508
Commits on Dec 3, 2003
  1. updated using info from maintanence/authors.pl script

    heikkil committed Dec 3, 2003
    svn path=/bioperl-run/trunk/; revision=13505
Commits on Nov 25, 2003
  1. Patched, thank you Albert

    bosborne committed Nov 25, 2003
    svn path=/bioperl-run/trunk/; revision=13504
Commits on Nov 19, 2003
  1. George Hartzell fixes

    hyphaltip committed Nov 19, 2003
    svn path=/bioperl-run/trunk/; revision=13503
Commits on Oct 3, 2003
  1. Modified call to io->tmpfile to get file name as well as handle

    djackson committed Oct 3, 2003
    svn path=/bioperl-run/trunk/; revision=13502
Commits on Sep 30, 2003
  1. use save_tempfiles, use PROGRAMNAME as a variable, use tempfile inste…

    hyphaltip committed Sep 30, 2003
    …ad of randomly generating filename
    
    svn path=/bioperl-run/trunk/; revision=13501
  2. typo

    hyphaltip committed Sep 30, 2003
    svn path=/bioperl-run/trunk/; revision=13500
Commits on Sep 18, 2003
  1. various fixes to get blat runnable in line with bioperl-live 1.2.3

    allenday committed Sep 18, 2003
    all tests now pass.
    
    svn path=/bioperl-run/trunk/; revision=13499
  2. well, at least it runs the blat program now, although it isn't seemin…

    allenday committed Sep 18, 2003
    …gly able
    
    to find the output tempfile to retrieve the results
    
    svn path=/bioperl-run/trunk/; revision=13498