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Commits on Dec 6, 2006
  1. @sendu

    mention wiki

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13821
  2. @sendu

    install instructions moved out to own file for consistency with other…

    sendu committed
    … packages
    
    svn path=/bioperl-run/trunk/; revision=13820
  3. @sendu

    latest version from core

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13819
Commits on Dec 5, 2006
  1. @sendu

    latest version from core

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13818
  2. @sendu

    version increase for final release, improved warning

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13817
  3. @sendu

    version increase for final release

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13816
  4. @sendu

    corrected number of tests

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13815
Commits on Nov 24, 2006
  1. @sendu

    don't fail if optional Clone module isn't installed

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13814
Commits on Nov 23, 2006
  1. @sendu

    no setting own version

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13813
  2. @sendu

    update fix from core

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13812
  3. @sendu

    new Build.PL install system, Makefile.PL still works but warns

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13811
Commits on Nov 20, 2006
  1. @sendu

    reverted test expectations to correspond to input file

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13810
  2. @sendu

    fixed to set -basedir properly and to use tempdir for working directory

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13809
Commits on Nov 16, 2006
  1. @sendu

    program_dir has a default of env var CLUSTALDIR when set

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13808
  2. @sendu

    -no_warning only works and is only needed on certain versions of TCoffee

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13807
Commits on Nov 13, 2006
  1. use rel2abs from File::Spec not Bio::Root::IO. Also, compily with som…

    nathan committed
    …e Bioperl best practices
    
    svn path=/bioperl-run/trunk/; revision=13806
  2. reverted filename back to what it was previously

    nathan committed
    svn path=/bioperl-run/trunk/; revision=13805
Commits on Nov 9, 2006
  1. v3.6 profile comment

    avilella committed
    svn path=/bioperl-run/trunk/; revision=13804
  2. @sendu

    Some modules don't define VERSION, default to 0

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13803
  3. adding profile option -- does not work for 3.6 but 3.52 -- please sho…

    avilella committed
    …ut if you see something wrong
    
    svn path=/bioperl-run/trunk/; revision=13802
Commits on Nov 8, 2006
  1. @sendu

    do not die, just warn when required things are missing

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13801
  2. @sendu

    good style for VERSION

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13800
  3. @sendu

    clearer version checking

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13799
  4. @sendu

    removed unneccessary use, corrected email question

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13798
  5. @sendu

    remove created resultfile

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13797
Commits on Nov 7, 2006
  1. @sendu

    neaten skip output

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13796
  2. @sendu

    new-style with added features and implementation of the pise email qu…

    sendu committed
    …estion
    
    svn path=/bioperl-run/trunk/; revision=13795
  3. first version

    avilella committed
    svn path=/bioperl-run/trunk/; revision=13794
  4. updated doc

    avilella committed
    svn path=/bioperl-run/trunk/; revision=13793
  5. @sendu

    added myself

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13792
  6. @sendu

    profile-related bug fixed, general issue with special characters caus…

    sendu committed
    …ing failure or warnings solved
    
    svn path=/bioperl-run/trunk/; revision=13791
  7. @sendu

    parser might have changed, but test expected the wrong answer; fixed.…

    sendu committed
    … v2.1 of FootPrinter creates an extraneous prediction; added test for that while keeping tests specific
    
    svn path=/bioperl-run/trunk/; revision=13790
  8. @sendu

    do cleanup of files created during run, pod typo fixes

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13789
  9. @sendu

    typo fix

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13788
  10. @sendu

    FOOTPRINTER_DIR env var is required

    sendu committed
    svn path=/bioperl-run/trunk/; revision=13787
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