collections.json

{
  "collections": [
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible.",
      "identifier": "0000001",
      "name": "Resources mentioned in \"Sharing biological data: why, when, and how\"",
      "resources": [
        "biostudies",
        "bmrb.entry",
        "cellimage",
        "ega.dataset",
        "ega.study",
        "emdb",
        "empiar",
        "genbank",
        "geo",
        "idr",
        "insdc.sra",
        "massive",
        "panorama",
        "pdb",
        "peptideatlas.dataset",
        "pride",
        "ssbd.dataset",
        "ssbd.project"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "context": "semweb",
      "description": "Resources used in the semantic web, drawing from lists in [BioContext](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) and [LinkML](https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/linked_data.curated.yaml) as well as W3C recommendations.",
      "identifier": "0000002",
      "name": "Semantic Web Context",
      "resources": [
        "ac",
        "bibo",
        "dc",
        "dcat",
        "dcterms",
        "dctypes",
        "doap",
        "faldo",
        "foaf",
        "idot",
        "oa",
        "oboinowl",
        "oslc",
        "owl",
        "pav",
        "prov",
        "qb",
        "qudt",
        "rdf",
        "rdfs",
        "schema",
        "sh",
        "shex",
        "skos",
        "skosxl",
        "swrl",
        "vann",
        "void",
        "xsd"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "The data sources used in xrefs in the ChEBI ontology. More information in the \"Data Sources\" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx).",
      "identifier": "0000003",
      "name": "ChEBI Data Sources",
      "resources": [
        "chebi",
        "chemidplus",
        "come",
        "drugbank",
        "ecmdb",
        "eurofir",
        "google.patent",
        "hmdb",
        "kegg.compound",
        "kegg.drug",
        "kegg.glycan",
        "knapsack",
        "lincs.smallmolecule",
        "lipidmaps",
        "metacyc.compound",
        "molbase.sheffield",
        "pdb",
        "pdb-ccd",
        "pesticides",
        "resid",
        "smid",
        "umbbd.compound",
        "webelements",
        "ymdb"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions.",
      "identifier": "0000004",
      "name": "International Classifications of Diseases",
      "resources": [
        "icd10",
        "icd10cm",
        "icd10pcs",
        "icd11",
        "icd11.code",
        "icd9",
        "icd9cm",
        "icdo"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "This collection contains various brain atlases from the Allen Institute.",
      "identifier": "0000005",
      "name": "Allen Institute Ontologies",
      "resources": [
        "dhba",
        "dmba",
        "hba",
        "mba",
        "pba"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "context": "spar",
      "description": "The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF.",
      "identifier": "0000006",
      "name": "SPAR Ontologies",
      "resources": [
        "bido",
        "biro",
        "c4o",
        "cito",
        "datacite",
        "deo",
        "doco",
        "fabio",
        "frapo",
        "mito",
        "pso",
        "puro",
        "pwo",
        "scoro"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes useful in annotating documentation provenance.",
      "identifier": "0000007",
      "name": "Publication Provenance Prefixes",
      "resources": [
        "arxiv",
        "doi",
        "pmc",
        "pubmed"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project.",
      "identifier": "0000008",
      "name": "ASKEM Epidemiology Prefixes",
      "resources": [
        "bfo",
        "caro",
        "doi",
        "doid",
        "dso",
        "hp",
        "ido",
        "oae",
        "oboinowl",
        "ovae",
        "owl",
        "pmc",
        "pubmed",
        "rdfs",
        "ro",
        "symp",
        "trans",
        "vo"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation",
      "identifier": "0000009",
      "name": "FHIR External Terminologies",
      "resources": [
        "atcc",
        "clinicaltrials",
        "clinvar.variation",
        "cosmic.gene",
        "cpt",
        "cvx",
        "dbsnp",
        "dicom",
        "dsm5",
        "ensembl",
        "hc.din",
        "hc.npn",
        "hgnc",
        "hl7.v2codesystem",
        "hl7.v3codesystem",
        "icd10",
        "icd9",
        "icf",
        "ietf.language",
        "imgt.hla",
        "iso.3166",
        "loinc",
        "lrg",
        "ncit",
        "ndc",
        "ndfrt",
        "nucc.taxonomy",
        "omim",
        "pharmgkb.gene",
        "pubmed",
        "radlex",
        "refseq",
        "rxnorm",
        "snomedct",
        "so",
        "ucum",
        "unii"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)",
      "identifier": "0000010",
      "name": "Global Biodata Coalition - Global Core Biodata Resources",
      "resources": [
        "agrkb",
        "bacdive",
        "brenda",
        "brenda.ligand",
        "brenda.ligandgroup",
        "bto",
        "chebi",
        "chembl",
        "civic.aid",
        "civic.did",
        "civic.eid",
        "civic.gid",
        "civic.sid",
        "civic.tid",
        "civic.vid",
        "ecocyc",
        "ena.embl",
        "ensembl",
        "eupath",
        "flybase",
        "gbif",
        "gnomad",
        "go",
        "hgnc",
        "interpro",
        "mgi",
        "orpha",
        "orphanet.ordo",
        "panther.family",
        "panther.node",
        "panther.pathway",
        "panther.pthcmp",
        "pdb",
        "pharmgkb.disease",
        "pharmgkb.drug",
        "pharmgkb.gene",
        "pharmgkb.pathways",
        "pmc",
        "pombase",
        "px",
        "reactome",
        "rgd",
        "rhea",
        "sgd",
        "ucsc",
        "uniprot",
        "wormbase",
        "zfin"
      ]
    },
    {
      "authors": [
        {
          "email": "hendrik.borgelt@tu-dortmund.de",
          "github": "HendrikBorgelt",
          "name": " Hendrik Borgelt",
          "orcid": "0000-0001-5886-7860"
        },
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies relevant for chemistry.\n\nThe NFDI program deploys a [custom instance](https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1) of the Ontology Lookup Service (OLS) that provides the ontologies in this list.\n\nA further analysis of the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found.",
      "identifier": "0000011",
      "name": "NDFI4Cat Collection",
      "organizations": [
        {
          "name": "NFDI4Cat",
          "ror": "01k9z4a50",
          "wikidata": "Q98380342"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "references": [
        "https://nfdi4cat.org/services/ontologie-sammlung/",
        "https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1",
        "https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat"
      ],
      "resources": [
        "afo",
        "bao",
        "bfo",
        "cao",
        "chebi",
        "cheminf",
        "chmo",
        "dolce",
        "edam",
        "emmo",
        "emmo.cif",
        "envo",
        "iso15926",
        "m4i",
        "mop",
        "ms",
        "nfdi4chem.ontocape",
        "nfdi4chem.osmo",
        "obi",
        "om",
        "rex",
        "rxno",
        "sbo",
        "voc4cat",
        "worldavatar.compchem",
        "worldavatar.kin"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)",
      "identifier": "0000012",
      "name": "Clinical Trial Registries",
      "resources": [
        "anzctr",
        "chictr",
        "clinicaltrials",
        "ctis",
        "ctri",
        "drks",
        "euclinicaltrials",
        "hc.trial",
        "irct",
        "isrctn",
        "itmctr",
        "jrct",
        "kcris",
        "lbctr",
        "pactr",
        "phrr",
        "rebec",
        "repec",
        "rpcec",
        "slctr",
        "snctp",
        "tctr",
        "uminctr"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "These resources represent software repositories",
      "identifier": "0000013",
      "name": "Software Package Repositories",
      "resources": [
        "cran",
        "crates",
        "npm",
        "packagist",
        "pypi",
        "rubygems"
      ]
    },
    {
      "authors": [
        {
          "email": "philip.stroemert@tib.eu",
          "github": "StroemPhi",
          "name": " Philip Strömert",
          "orcid": "0000-0002-1595-3213"
        }
      ],
      "description": "A collection of ontologies relevant within the [NFDI4Chem project](https://www.nfdi4chem.de/) that is mostly based on the overview paper [Ontologies4Chem: the landscape of ontologies in chemistry](https://doi.org/10.1515/pac-2021-2007).\n\nNFDI4Chem deploys a [custom instance](https://terminology.nfdi4chem.de/ts/) of the Ontology Lookup Service (OLS), called NFDI4Chem Terminology Services (TS), that provides the ontologies in this list. This list contains ontologies that cover various domains of chemistry (e.g. ChEBI, CHMO, and RXNO), those that are dependencies of these chemistry specific ontologies (e.g. BFO, RO, IAO, and OBI) as well as those ontologies, which where indexed in the NFDI4Chem TS for interoperability research purposes (e.g. PROV-O, SOSA, and OBOE).",
      "identifier": "0000014",
      "name": "NFDI4Chem Collection",
      "organizations": [
        {
          "name": "NFDI4Chem",
          "ror": "05wwzbv21",
          "wikidata": "Q96678459"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "references": [
        "https://terminology.nfdi4chem.de/ts/",
        "https://doi.org/10.1515/pac-2021-2007"
      ],
      "resources": [
        "afo",
        "bfo",
        "bto",
        "chebi",
        "cheminf",
        "chemrof",
        "chiro",
        "chmo",
        "duo",
        "edam",
        "efo",
        "enm",
        "envo",
        "fair",
        "fix",
        "gainesville.core",
        "iao",
        "mod",
        "mop",
        "ms",
        "ncit",
        "nmr",
        "obi",
        "oboe",
        "om",
        "ontorxn",
        "pato",
        "proco",
        "prov",
        "reproduceme",
        "rex",
        "ro",
        "rxno",
        "sepio",
        "sio",
        "sosa",
        "ssn",
        "ssn.system",
        "suprabank.additive",
        "suprabank.buffer",
        "suprabank.interaction",
        "suprabank.molecule",
        "suprabank.solvent",
        "swo",
        "time",
        "uo",
        "vibso",
        "voc4cat",
        "worldavatar.compchem",
        "worldavatar.kin",
        "worldavatar.os"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of resources added during Biocuration 2025 in Kansas City, MO, USA.",
      "identifier": "0000015",
      "name": "Biocuration Conference 2025 Collection",
      "resources": [
        "antifam",
        "biomarkerkb.biomarker",
        "biomarkerkb.canonical",
        "blastrule",
        "emi",
        "endlessforms.collection",
        "endlessforms.element",
        "endlessforms.graphic",
        "endlessforms.image",
        "endlessforms.library",
        "endlessforms.unit",
        "gdo"
      ]
    },
    {
      "authors": [
        {
          "email": "robert.j.allaway@gmail.com",
          "github": "allaway",
          "name": "Robert Allaway",
          "orcid": "0000-0003-3573-3565"
        }
      ],
      "description": "A curated list by Sage Bionetworks of external resources that are automatically linked on Synapse.org and affiliated data portals",
      "identifier": "0000016",
      "name": "Synapse.org external links",
      "resources": [
        "ado",
        "agrkb",
        "anzctr",
        "arrayexpress",
        "arxiv",
        "atc",
        "atcc",
        "bacdive",
        "bfo",
        "bgee.gene",
        "biocyc",
        "biogrid",
        "bioportal",
        "bioproject",
        "biorxiv",
        "biosample",
        "biostudies",
        "bmrb.entry",
        "brenda",
        "brenda.ligand",
        "brenda.ligandgroup",
        "bto",
        "cath",
        "cbioportal",
        "cdd",
        "cellimage",
        "cellxgene.collection",
        "chebi",
        "chembl",
        "chembl.compound",
        "chemspider",
        "civic.aid",
        "civic.did",
        "civic.eid",
        "civic.gid",
        "civic.sid",
        "civic.tid",
        "civic.vid",
        "clinicaltrials",
        "clinvar.record",
        "clinvar.variation",
        "complexportal",
        "cosmic.cell",
        "cosmic.gene",
        "cpt",
        "ctd.chemical",
        "ctri",
        "cvx",
        "dbgap",
        "dbsnp",
        "decipher",
        "depmap",
        "dhba",
        "disprot",
        "dmba",
        "doi",
        "doid",
        "drks",
        "drugbank",
        "drugcentral",
        "duo",
        "ec",
        "ecacc",
        "edam",
        "ega.dataset",
        "ega.study",
        "emdb",
        "empiar",
        "ena.embl",
        "ensembl",
        "ensembl.metazoa",
        "ensembl.plant",
        "euclinicaltrials",
        "eupath",
        "exac.variant",
        "fairsharing",
        "flybase",
        "fma",
        "funderregistry",
        "gard",
        "gbif",
        "gdc",
        "genecards.gene",
        "geo",
        "go",
        "gramene.gene",
        "gramene.growthstage",
        "gramene.protein",
        "gtdb",
        "hba",
        "hc.trial",
        "hgnc",
        "hl7.v2codesystem",
        "hmdb",
        "icd10",
        "icd9",
        "icdc",
        "icf",
        "idr",
        "imgt.hla",
        "inchi",
        "inchikey",
        "insdc",
        "insdc.sra",
        "intact",
        "interpro",
        "iso.3166",
        "isrctn",
        "itis",
        "jaxmice",
        "kegg",
        "kegg.compound",
        "kegg.disease",
        "kegg.drug",
        "kegg.glycan",
        "kegg.pathway",
        "kegg.reaction",
        "loinc",
        "massive",
        "mba",
        "mesh",
        "metabolights",
        "metacyc.compound",
        "mgi",
        "mir",
        "mirbase",
        "mondo",
        "ncbigene",
        "ncbiprotein",
        "ncbitaxon",
        "ncit",
        "ndc",
        "ndfrt",
        "nextprot",
        "nihreporter.project",
        "nord",
        "omim",
        "omop",
        "orcid",
        "orpha",
        "orphanet.ordo",
        "osf",
        "panther.family",
        "panther.pathway",
        "panther.pthcmp",
        "pba",
        "pdb",
        "pdb-ccd",
        "pdb.ligand",
        "pdc.study",
        "peco",
        "peptideatlas.dataset",
        "pfam",
        "pfam.clan",
        "pharmgkb.disease",
        "pharmgkb.drug",
        "pharmgkb.gene",
        "pharmgkb.pathways",
        "pmc",
        "pombase",
        "pride.project",
        "pubchem.compound",
        "pubmed",
        "px",
        "radlex",
        "reactome",
        "rebec",
        "refseq",
        "rfam",
        "rfc",
        "rgd",
        "rhea",
        "rnacentral",
        "ror",
        "rrid",
        "rrrc",
        "rxnorm",
        "scop",
        "sgd",
        "signor",
        "snomedct",
        "so",
        "ssbd.dataset",
        "ssbd.project",
        "stitch",
        "string",
        "tao",
        "tcdb",
        "uberon",
        "unii",
        "uniparc",
        "uniprot",
        "uniprot.isoform",
        "uniprot.proteome",
        "uniref",
        "wikidata",
        "wikigenes",
        "wikipathways",
        "wormbase",
        "xenbase",
        "zenodo.record",
        "zfin",
        "zinc"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes relevant for the [Data Literacy Alliance (DALIA)](https://dalia.education/en) project",
      "identifier": "0000017",
      "name": "DALIA Resources",
      "resources": [
        "ans.educationlevel",
        "bibframe",
        "bibo",
        "bmbf.glossary",
        "ceds.element",
        "citedcat",
        "codata.rdmt",
        "dai.thesauri",
        "datacite",
        "dbpedia.resource",
        "dcterms",
        "emmo",
        "fabio",
        "iana.mediatype",
        "isced1997",
        "isced2011",
        "loc.fdd",
        "m4i",
        "marc21",
        "modalia",
        "nfdi4dso",
        "owl",
        "prov",
        "sage.socialsciencethesaurus",
        "schema",
        "sio",
        "spdx",
        "spdx.term",
        "t4fs",
        "unesco.thesaurus",
        "wdrs",
        "wikidata"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        },
        {
          "email": "m.voigt@hzdr.de",
          "github": "eilmiv",
          "name": "Martin Voigt",
          "orcid": "0000-0001-5556-838X"
        }
      ],
      "description": "The prefixes appearing in this collection correspond resources whose entities could appear as values for target groups, media types, educational levels, and other fields in OER data models. It can also include parts that are used to construct schemas for OERs\n\nIt was originally curated as part of the publication [_Teaching RDM in a smart advanced inorganic lab course and its provision in the DALIA platform_ (arxiv:2509.18902)](https://arxiv.org/pdf/2509.18902).",
      "identifier": "0000018",
      "name": "Resources for modeling Open Educational Resources",
      "references": [
        "https://arxiv.org/pdf/2509.18902"
      ],
      "resources": [
        "adcad",
        "ans.educationlevel",
        "ccso",
        "ceds.learning_resource_type",
        "edam",
        "gsso",
        "iana.mediatype",
        "isced1997",
        "isced2011",
        "isced2013",
        "kim.amb",
        "kim.conditionsofaccess",
        "kim.educationlevel",
        "kim.esv",
        "kim.hcrt",
        "kim.hochschulfaechersystematik",
        "kim.lp",
        "kim.schularten",
        "kim.schulfaecher",
        "loc.fdd",
        "lrmi",
        "lrmi.alignmenttype",
        "lrmi.educationalaudiencerole",
        "lrmi.eduse",
        "lrmi.interact",
        "lrmi.resourcetype",
        "modalia",
        "oeh.educationlevel",
        "oerschema",
        "openeduhub.context",
        "schema",
        "t4fs",
        "unesco.thesaurus",
        "vivo"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes relevant for the digital humanities",
      "identifier": "0000019",
      "name": "Digital Humanities",
      "references": [
        "https://det.social/@HxxxKxxx/115492424655875213"
      ],
      "resources": [
        "cidoc.crm",
        "edm",
        "getty.att",
        "getty.cona",
        "getty.gvp",
        "getty.ia",
        "getty.tgn",
        "getty.ulan",
        "iconclass"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "[KonsortSWD (Strengthen, Widen, Deepen)](https://www.nfdi.de/consortia-konsortswd) is the German National Data Infrastructure (NFDI) consortium for social, educational, behavioral, and economic sciences. This collection reflects the prefixes collected by NFDI Section Metadata for ontologies and controlled vocabularies used by members of the consortium.",
      "identifier": "0000020",
      "name": "KonsortSWD",
      "organizations": [
        {
          "name": "KonsortSWD",
          "ror": "020tty630",
          "wikidata": "Q98380340"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "cessda",
        "cessda.cdcpublishernames",
        "cessda.cessdadatacataloguecollections",
        "cessda.cessdapersistentidentifiertypes",
        "cessda.countrynamesandcodes",
        "cessda.topicclassification",
        "ddi.aggregationmethod",
        "ddi.analysisunit",
        "ddi.characterset",
        "ddi.commonalitytype",
        "ddi.contributorrole",
        "ddi.datasourcetype",
        "ddi.datatype",
        "ddi.datetype",
        "ddi.generaldataformat",
        "ddi.languageproficiency",
        "ddi.lifecycleeventtype",
        "ddi.modeofcollection",
        "ddi.numerictype",
        "ddi.responseunit",
        "ddi.samplingprocedure",
        "ddi.softwarepackage",
        "ddi.summarystatistictype",
        "ddi.timemethod",
        "ddi.timezone",
        "ddi.typeofaddress",
        "ddi.typeofconceptgroup",
        "ddi.typeoffrequency",
        "ddi.typeofinstrument",
        "ddi.typeofnote",
        "ddi.typeoftelephone",
        "ddi.typeoftranslationmethod",
        "gesis.kategorienschemawahlstudien",
        "gesis.rexconcepts",
        "gesis.rexdatatype",
        "gesis.rexgroups",
        "gesis.variables-relations"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes for ontologies relevant for the NFDI4Energy",
      "identifier": "0000021",
      "name": "NFDI4Energy Resources",
      "organizations": [
        {
          "name": "NFDI4Energy",
          "ror": "0238fds33",
          "wikidata": "Q113499626"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bonsai",
        "brick",
        "digitalconstruction.energy",
        "dogont",
        "energymarketroles",
        "meno",
        "oeo",
        "openadr",
        "saref.ener",
        "saref.grid",
        "sargon",
        "tib.re",
        "udsaes.fmi",
        "udsaes.sms",
        "zbw.stw"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes for ontologies relevant for the NFDI4Ing",
      "identifier": "0000022",
      "name": "NFDI4Ing Resources",
      "organizations": [
        {
          "name": "NFDI4ING",
          "ror": "00enhv193",
          "wikidata": "Q98380344"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "afo",
        "atomistic",
        "battinfo",
        "bfo",
        "bonsai",
        "bot",
        "brick",
        "building",
        "cc",
        "commoncoreontology",
        "condo",
        "cora",
        "credit",
        "dcterms",
        "dfg.fo",
        "digitalconstruction.energy",
        "digitalconstruction.lifecycle",
        "digitalconstruction.occupancy",
        "dogont",
        "dpvocab",
        "duo",
        "edam",
        "emmo",
        "fair",
        "fidbaudigital.subject",
        "fiesta.iot",
        "findex.bau",
        "findex.raum",
        "ftonto",
        "geosparql",
        "gist",
        "iao",
        "idsa",
        "iirds.core",
        "iirds.mch",
        "iirds.sft",
        "infosecsos",
        "iofcore",
        "kdsf.ffk",
        "kit.mtxx",
        "kpio",
        "listdb.onto",
        "m4i",
        "mathmoddb",
        "mobivoc",
        "modsci",
        "oeo",
        "okn.sd",
        "om",
        "panet",
        "physh",
        "pmdco",
        "polymat",
        "prov",
        "rosetta",
        "saref",
        "saref.auto",
        "saref.building",
        "saref.ehaw",
        "saref.ener",
        "saref.environment",
        "saref.industry",
        "saref.lift",
        "saref.system",
        "saref.water",
        "saref.wearable",
        "sepio",
        "sh",
        "sio",
        "sosa",
        "ssn",
        "ssn.system",
        "sweet",
        "swo",
        "t4fs",
        "tib.bk",
        "tib.bo",
        "tib.dot",
        "tib.dr",
        "tib.gpo",
        "tib.hpont",
        "tib.ifc",
        "tib.io",
        "tib.ioc",
        "tib.lis",
        "tib.mat",
        "tib.mdo",
        "tib.mdv",
        "tib.mt",
        "tib.n0",
        "tib.ofm",
        "tib.sto",
        "tib.tso",
        "tribain",
        "uat",
        "uo",
        "vssocore",
        "woc.ontology",
        "wot.td"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes for ontologies relevant for the DataPLANT (i.e. the NFDI consortium for plants)",
      "identifier": "0000023",
      "name": "DataPLANT Resources",
      "organizations": [
        {
          "name": "DataPLANT",
          "ror": "01v7r4v08",
          "wikidata": "Q98380336"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "agro",
        "bao",
        "bco",
        "bfo",
        "bto",
        "chebi",
        "chmo",
        "cob",
        "dpbo",
        "edam",
        "efo",
        "envo",
        "flopo",
        "go",
        "mmo",
        "mod",
        "ms",
        "msio",
        "ncit",
        "obi",
        "omp",
        "pato",
        "pco",
        "peco",
        "po",
        "ppeo",
        "ppo",
        "pso",
        "ro",
        "stato",
        "swo",
        "to",
        "uberon",
        "uo"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes for ontologies relevant for [FAIRmat](https://www.nfdi.de/consortia-fairmat).",
      "identifier": "0000024",
      "name": "FAIRmat Resources",
      "organizations": [
        {
          "name": "FAIRmat",
          "ror": "034pbpe12",
          "wikidata": "Q108542373"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bfo",
        "nexus",
        "tfsco",
        "voc4cat"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        },
        {
          "github": "epoz",
          "name": "Etienne Posthumus",
          "orcid": "0000-0002-0006-7542"
        }
      ],
      "description": "Prefixes for ontologies relevant for NFDI4Culture.",
      "identifier": "0000025",
      "name": "NFDI4Culture Resources",
      "organizations": [
        {
          "name": "NFDI4Culture",
          "ror": "001jhv750",
          "wikidata": "Q98276929"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bot",
        "cidoc.crm",
        "gesah",
        "iconclass",
        "nfdi4culture.cto",
        "premis"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "Prefixes for ontologies relevant for DAPHNE4NFDI.",
      "identifier": "0000026",
      "name": "DAPHNE4NFDI Resources",
      "organizations": [
        {
          "name": "DAPHNE4NFDI",
          "ror": "03xrvbe74",
          "wikidata": "Q108542327"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "emg"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for MaRDI",
      "identifier": "0000027",
      "name": "MaRDI Collection",
      "organizations": [
        {
          "name": "MaRDI",
          "ror": "04ncnzm65",
          "wikidata": "Q108327788"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for BERD@NFDI",
      "identifier": "0000028",
      "name": "BERD@NFDI Collection",
      "organizations": [
        {
          "name": "BERD@NFDI",
          "ror": "02cxb1m07",
          "wikidata": "Q108542181"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4DataScience",
      "identifier": "0000029",
      "name": "NFDI4DataScience Collection",
      "organizations": [
        {
          "name": "NFDI4DataScience",
          "ror": "00bb4nn95",
          "wikidata": "Q108542422"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4Earth",
      "identifier": "0000030",
      "name": "NFDI4Earth Collection",
      "organizations": [
        {
          "name": "NFDI4Earth",
          "ror": "01f5dqg10",
          "wikidata": "Q108542504"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI-MatWerk",
      "identifier": "0000031",
      "name": "NFDI-MatWerk Collection",
      "organizations": [
        {
          "name": "NFDI-MatWerk",
          "ror": "01d2qgg03",
          "wikidata": "Q108542607"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for PUNCH4NFDI",
      "identifier": "0000032",
      "name": "PUNCH4NFDI Collection",
      "organizations": [
        {
          "name": "PUNCH4NFDI",
          "ror": "03f6sdf65",
          "wikidata": "Q108542637"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for FAIRagro",
      "identifier": "0000033",
      "name": "FAIRagro Collection",
      "organizations": [
        {
          "name": "FAIRagro",
          "ror": "00r0qs524",
          "wikidata": "Q113486316"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "damien@gerbi-gmb.de",
          "github": "gouttegd",
          "name": "Damien Goutte-Gattat",
          "orcid": "0000-0002-6095-8718"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4BIOIMAGE",
      "identifier": "0000034",
      "name": "NFDI4BIOIMAGE Collection",
      "organizations": [
        {
          "name": "NFDI4BIOIMAGE",
          "ror": "01vnkaz16",
          "wikidata": "Q113500855"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry",
        "chebi",
        "cl",
        "clo",
        "cmpo",
        "dicom",
        "doid",
        "edam",
        "efo",
        "fbbi",
        "go",
        "mesh",
        "mondo",
        "mp",
        "mpath",
        "ncbitaxon",
        "obi",
        "radlex",
        "snomedct",
        "swo",
        "uberon",
        "uo"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDIxCS",
      "identifier": "0000035",
      "name": "NFDIxCS Collection",
      "organizations": [
        {
          "name": "NFDIxCS",
          "ror": "0033j3009",
          "wikidata": "Q113501071"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4Objects",
      "identifier": "0000036",
      "name": "NFDI4Objects Collection",
      "organizations": [
        {
          "name": "NFDI4Objects",
          "ror": "01xptp363",
          "wikidata": "Q98229157"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
          "orcid": "0000-0003-4423-4370"
        }
      ],
      "description": "A collection of ontologies, controlled vocabularies, database, and schemas relevant for NFDI4Memory",
      "identifier": "0000037",
      "name": "NFDI4Memory Collection",
      "organizations": [
        {
          "name": "NFDI4Memory",
          "ror": "0310v3480",
          "wikidata": "Q98231721"
        },
        {
          "name": "NFDI",
          "ror": "05qj6w324",
          "wikidata": "Q61658497"
        }
      ],
      "resources": [
        "bioregistry"
      ]
    },
    {
      "authors": [
        {
          "email": "cthoyt@gmail.com",
          "github": "cthoyt",
          "name": "Charles Tapley Hoyt",
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}