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1277 lines (1277 loc) 路 38.9 KB
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{
"metaregistry": [
{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "required",
"example": "present",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "present",
"search": true,
"synonyms": "missing",
"version": "present"
},
"bibtex": "Hoehndorf2015",
"download": "http://aber-owl.net/api/ontology/?format=json",
"governance": {
"accepts_external_contributions": false,
"curates": false,
"curation": "import",
"imports": true,
"issue_tracker": "https://github.com/bio-ontology-research-group/aberowlweb/issues",
"public_version_controlled_data": false,
"review_team": "n/a",
"scope": "bio-ontologies",
"status": "active"
},
"prefix": "aberowl",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"resolver_type": "lookup",
"resolver_uri_format": "http://aber-owl.net/ontology/$1/#/Browse/<http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2F$1_$2>",
"search_uri_format": "http://aber-owl.net/#/$1/Ontologies"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "present",
"description": "required",
"example": "present",
"homepage": "required",
"license": "present",
"name": "required",
"pattern": "missing",
"provider": "required",
"search": true,
"synonyms": "missing",
"version": "present"
},
"bibtex": "Jonquet2018",
"governance": {
"accepts_external_contributions": true,
"curates": true,
"curation": "opaque-review",
"imports": false,
"issue_tracker": "https://github.com/agroportal/project-management/issues",
"public_version_controlled_data": false,
"review_team": "private",
"scope": "agro-ontologies",
"status": "active"
},
"prefix": "agroportal",
"qualities": {
"automatable_download": true,
"bulk_data": false,
"no_authentication": false,
"structured_data": true
},
"resolver_type": "lookup"
},
{
"availability": {
"alternate_providers": "present",
"contact": "present",
"description": "present",
"example": "missing",
"homepage": "present",
"license": "present",
"name": "required",
"pattern": "present",
"provider": "missing",
"search": true,
"synonyms": "missing",
"version": "missing"
},
"download": "https://bartoc.org/data/dumps/latest.ndjson",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/gbv/bartoc.org",
"curates": true,
"curation": "opaque-review",
"imports": false,
"issue_tracker": "https://github.com/gbv/bartoc.org/issues",
"public_version_controlled_data": false,
"review_team": "public",
"scope": "general",
"status": "active"
},
"prefix": "bartoc",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"short_name": "BARTOC"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "missing",
"example": "missing",
"homepage": "missing",
"license": "missing",
"name": "missing",
"pattern": "missing",
"provider": "present",
"search": false,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "biocontext",
"download": "https://raw.githubusercontent.com/prefixcommons/biocontext/master/registry/commons_context.jsonld",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/prefixcommons/biocontext",
"curates": true,
"curation": "open-review",
"data_repository": "https://github.com/prefixcommons/biocontext",
"imports": false,
"issue_tracker": "https://github.com/prefixcommons/biocontext/issues",
"public_version_controlled_data": true,
"review_team": "inferrable",
"scope": "internal",
"status": "active"
},
"prefix": "biocontext",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
}
},
{
"prefix": "biodivportal",
"qualities": {
"automatable_download": true,
"bulk_data": false,
"no_authentication": false,
"structured_data": true
},
"resolver_type": "lookup",
"short_name": "BiodivPortal"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "missing",
"example": "missing",
"homepage": "missing",
"license": "present",
"name": "required",
"pattern": "missing",
"provider": "required",
"search": false,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Unni2022",
"download": "https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.yaml",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/biolink/biolink-model",
"curates": true,
"curation": "open-review",
"data_repository": "https://github.com/biolink/biolink-model",
"imports": false,
"issue_tracker": "https://github.com/biolink/biolink-model/issues",
"public_version_controlled_data": true,
"review_team": "inferrable",
"scope": "internal",
"status": "active"
},
"prefix": "biolink.resource",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"short_name": "Biolink"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "present",
"description": "required",
"example": "present",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "required",
"search": true,
"synonyms": "missing",
"version": "required"
},
"bibtex": "Whetzel2011",
"governance": {
"accepts_external_contributions": true,
"curates": true,
"curation": "opaque-review",
"imports": false,
"issue_tracker": "https://github.com/ncbo/bioportal-project/issues",
"public_version_controlled_data": false,
"review_team": "private",
"scope": "bio-ontologies",
"status": "active"
},
"prefix": "bioportal",
"qualities": {
"automatable_download": true,
"bulk_data": false,
"no_authentication": false,
"structured_data": true
},
"resolver_type": "lookup",
"short_name": "BioPortal"
},
{
"availability": {
"alternate_providers": "present",
"contact": "present",
"description": "required",
"example": "required",
"homepage": "required",
"license": "present",
"name": "required",
"pattern": "present",
"provider": "present",
"search": true,
"synonyms": "present",
"version": "present"
},
"bibtex": "Hoyt2022",
"download": "https://bioregistry.io/api/registry/",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/biopragmatics/bioregistry",
"curates": true,
"curation": "open-review",
"data_repository": "https://github.com/biopragmatics/bioregistry",
"imports": true,
"issue_tracker": "https://github.com/biopragmatics/bioregistry/issues",
"public_version_controlled_data": true,
"review_team": "public",
"scope": "life sciences",
"status": "active"
},
"prefix": "bioregistry",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"resolver_type": "resolver",
"resolver_uri_format": "https://bioregistry.io/$1:$2"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "missing",
"example": "missing",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "required",
"search": false,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Bairoch2018",
"governance": {
"accepts_external_contributions": false,
"curates": true,
"curation": "private",
"imports": false,
"public_version_controlled_data": false,
"review_team": "n/a",
"scope": "internal",
"status": "active"
},
"prefix": "cellosaurus.resource",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"short_name": "Cellosaurus"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "missing",
"example": "missing",
"homepage": "missing",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "missing",
"search": false,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Hastings2011",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/semanticchemistry/semanticchemistry",
"curates": true,
"curation": "open-review",
"data_repository": "https://github.com/semanticchemistry/semanticchemistry",
"imports": false,
"issue_tracker": "https://github.com/semanticchemistry/semanticchemistry/issues",
"public_version_controlled_data": true,
"review_team": "inferrable",
"scope": "chemistry",
"status": "unresponsive"
},
"prefix": "cheminf",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"resolver_type": "lookup",
"short_name": "CHEMINF"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "missing",
"example": "present",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "required",
"search": true,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Arnaud2020",
"download": "https://cropontology.org/metadata",
"governance": {
"accepts_external_contributions": true,
"curates": true,
"curation": "opaque-review",
"imports": false,
"issue_tracker": "https://github.com/EBISPOT/OLS/issues",
"public_version_controlled_data": false,
"review_team": "public",
"scope": "agro-ontologies",
"status": "active"
},
"prefix": "cropoct",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"resolver_type": "lookup",
"resolver_uri_format": "https://cropontology.org/term/$1:$2",
"short_name": "CropOCT"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "present",
"description": "required",
"example": "present",
"homepage": "present",
"license": "present",
"name": "required",
"pattern": "missing",
"provider": "present",
"search": true,
"synonyms": "missing",
"version": "present"
},
"bibtex": "Kechagioglou2021",
"governance": {
"accepts_external_contributions": true,
"curates": true,
"curation": "opaque-review",
"imports": false,
"public_version_controlled_data": false,
"review_team": "private",
"scope": "eco-ontologies",
"status": "active"
},
"prefix": "ecoportal",
"qualities": {
"automatable_download": true,
"bulk_data": false,
"no_authentication": false,
"structured_data": true
},
"resolver_type": "lookup"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "missing",
"example": "missing",
"homepage": "missing",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "missing",
"search": true,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Ison2013",
"download": "http://edamontology.org/EDAM.owl",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/edamontology/edamontology",
"curates": true,
"curation": "community",
"data_repository": "https://github.com/edamontology/edamontology",
"imports": false,
"issue_tracker": "https://github.com/edamontology/edamontology/issues",
"public_version_controlled_data": true,
"review_team": "inferrable",
"scope": "Life Sciences",
"status": "active"
},
"prefix": "edam.data",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"short_name": "EDAM"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "required",
"description": "required",
"example": "missing",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "missing",
"search": true,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Sansone2019",
"governance": {
"accepts_external_contributions": true,
"curates": true,
"curation": "opaque-review",
"imports": false,
"public_version_controlled_data": false,
"review_team": "private",
"scope": "life sciences",
"status": "active"
},
"prefix": "fairsharing",
"qualities": {
"automatable_download": true,
"bulk_data": false,
"no_authentication": false,
"structured_data": true
}
},
{
"availability": {
"alternate_providers": "present",
"contact": "missing",
"description": "present",
"example": "present",
"homepage": "present",
"license": "missing",
"name": "required",
"pattern": "present",
"provider": "present",
"search": false,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "TheGeneOntologyConsortium2019",
"download": "https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/geneontology/go-site",
"curates": true,
"curation": "open-review",
"data_repository": "https://github.com/geneontology/go-site",
"imports": false,
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"public_version_controlled_data": true,
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"bulk_data": true,
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"structured_data": true
},
"short_name": "GO"
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{
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"contact": "present",
"description": "present",
"example": "missing",
"homepage": "present",
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"name": "required",
"pattern": "missing",
"provider": "missing",
"search": false,
"synonyms": "missing",
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"bibtex": "Bender2013",
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"curates": true,
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"prefix": "hl7",
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"bulk_data": false,
"no_authentication": true,
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"short_name": "HL7"
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{
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"contact": "missing",
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"example": "missing",
"homepage": "present",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "missing",
"search": false,
"synonyms": "missing",
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"download": "https://integbio.jp/dbcatalog/files/zip/en_integbio_dbcatalog_cc0_20240112_utf8.csv.zip",
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"curates": false,
"curation": "import",
"imports": true,
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"review_team": "n/a",
"scope": "bio-ontologies",
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"prefix": "integbio",
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"bulk_data": true,
"no_authentication": true,
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"search_uri_format": "https://integbio.jp/dbcatalog/dbsearch-en?cck=database_catalog&order_en=1&dbcat_search_all_en=$1&tag2_en=&tag3_en=&inst_country_en=&inst_country_others_en=&dbarchive_en=&togotv_en=&data_downloadable_en=&biosharing_en=&record_creation_en=&status_en=&dbcat_ministry=&taxonomy=&lang=en&search=database_catalog_search_en&task=search"
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{
"availability": {
"alternate_providers": "missing",
"contact": "missing",
"description": "present",
"example": "missing",
"homepage": "present",
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"name": "required",
"pattern": "missing",
"provider": "present",
"search": true,
"synonyms": "missing",
"version": "missing"
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"download": "https://lov.linkeddata.es/lov.n3.gz",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/pyvandenbussche/lov",
"curates": true,
"curation": "import",
"imports": true,
"issue_tracker": "https://github.com/pyvandenbussche/lov/issues",
"public_version_controlled_data": false,
"review_team": "n/a",
"scope": "semantic web",
"status": "active"
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"prefix": "lov",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
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"search_uri_format": "https://lov.linkeddata.es/dataset/lov/vocabs?q=$1",
"short_name": "LOV"
},
{
"availability": {
"alternate_providers": "present",
"contact": "missing",
"description": "required",
"example": "required",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "required",
"provider": "required",
"search": true,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Juty2012",
"download": "https://registry.api.identifiers.org/resolutionApi/getResolverDataset",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/identifiers-org/cloud-satellite-web-spa",
"curates": true,
"curation": "opaque-review",
"imports": false,
"issue_tracker": "https://github.com/identifiers-org/identifiers-org.github.io/issues",
"public_version_controlled_data": false,
"review_team": "private",
"scope": "life sciences",
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"prefix": "miriam",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
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"resolver_type": "resolver",
"resolver_uri_format": "https://identifiers.org/$1:$2"
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{
"availability": {
"alternate_providers": "present",
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"example": "required",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "required",
"provider": "required",
"search": false,
"synonyms": "present",
"version": "missing"
},
"bibtex": "Wimalaratne2018",
"download": "https://n2t.net/e/n2t_full_prefixes.yaml",
"governance": {
"accepts_external_contributions": false,
"curates": false,
"curation": "import",
"imports": true,
"public_version_controlled_data": false,
"review_team": "n/a",
"scope": "life sciences",
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"prefix": "n2t",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
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"resolver_type": "resolver",
"resolver_uri_format": "https://n2t.net/$1:$2",
"short_name": "N2T"
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{
"availability": {
"alternate_providers": "missing",
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"example": "required",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "missing",
"search": false,
"synonyms": "missing",
"version": "missing"
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"bibtex": "Clark2016",
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"curates": true,
"curation": "private",
"imports": false,
"public_version_controlled_data": false,
"review_team": "n/a",
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},
"prefix": "ncbi.resource",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": false
},
"short_name": "NCBI"
},
{
"availability": {
"alternate_providers": "missing",
"contact": "required",
"description": "required",
"example": "missing",
"homepage": "required",
"license": "required",
"name": "required",
"pattern": "missing",
"provider": "missing",
"search": true,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Jackson2021",
"download": "http://www.obofoundry.org/registry/ontologies.yml",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/OBOFoundry/OBOFoundry.github.io",
"curates": true,
"curation": "open-review",
"data_repository": "https://github.com/OBOFoundry/OBOFoundry.github.io",
"imports": false,
"issue_tracker": "https://github.com/OBOFoundry/OBOFoundry.github.io/issues",
"public_version_controlled_data": true,
"review_team": "public",
"scope": "bio-ontologies",
"status": "active"
},
"prefix": "obofoundry",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
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"resolver_type": "resolver",
"resolver_uri_format": "http://purl.obolibrary.org/obo/$1_$2"
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{
"availability": {
"alternate_providers": "missing",
"contact": "present",
"description": "required",
"example": "present",
"homepage": "present",
"license": "required",
"name": "required",
"pattern": "missing",
"provider": "present",
"search": true,
"synonyms": "missing",
"version": "present"
},
"bibtex": "Cote2006a",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/EBISPOT/ols4",
"comments": "Accepts suggestions through the OLS issue tracker at https://github.com/EBISPOT/ols4/issues",
"curates": false,
"curation": "import",
"data_repository": "https://github.com/EBISPOT/OLS",
"imports": true,
"issue_tracker": "https://github.com/EBISPOT/ols4/issues/",
"public_version_controlled_data": true,
"review_team": "inferrable",
"scope": "bio-ontologies",
"status": "active"
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"prefix": "ols",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
},
"resolver_type": "lookup",
"short_name": "OLS"
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{
"availability": {
"alternate_providers": "missing",
"contact": "required",
"description": "required",
"example": "present",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "present",
"search": false,
"synonyms": "missing",
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"bibtex": "Ong2017",
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"curates": false,
"curation": "import",
"imports": true,
"issue_tracker": "https://github.com/OntoZoo/ontobee/issues",
"public_version_controlled_data": false,
"review_team": "n/a",
"scope": "bio-ontologies",
"status": "active"
},
"prefix": "ontobee",
"qualities": {
"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": false
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"resolver_type": "lookup",
"resolver_uri_format": "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2"
},
{
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"alternate_providers": "missing",
"contact": "missing",
"description": "present",
"example": "missing",
"homepage": "required",
"license": "missing",
"name": "required",
"pattern": "missing",
"provider": "missing",
"search": true,
"synonyms": "missing",
"version": "missing"
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"governance": {
"accepts_external_contributions": true,
"curates": true,
"curation": "opaque-review",
"imports": false,
"public_version_controlled_data": false,
"review_team": "n/a",
"scope": "bio-ontologies",
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},
"prefix": "pathguide",
"qualities": {
"automatable_download": false,
"bulk_data": false,
"no_authentication": true,
"structured_data": false
}
},
{
"availability": {
"alternate_providers": "present",
"contact": "missing",
"description": "missing",
"example": "missing",
"homepage": "missing",
"license": "missing",
"name": "missing",
"pattern": "missing",
"provider": "required",
"search": false,
"synonyms": "missing",
"version": "missing"
},
"download": "https://prefix.cc/context.jsonld",
"governance": {
"accepts_external_contributions": true,
"code_repository": "https://github.com/cygri/prefix.cc/",
"curates": true,
"curation": "community",
"imports": false,
"issue_tracker": "https://github.com/cygri/prefix.cc/issues",
"public_version_controlled_data": false,
"review_team": "democratic",
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"prefix": "prefixcc",
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"automatable_download": true,
"bulk_data": true,
"no_authentication": true,
"structured_data": true
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},
{
"availability": {
"alternate_providers": "present",
"contact": "missing",
"description": "present",
"example": "present",
"homepage": "present",
"license": "missing",
"name": "required",
"pattern": "present",
"provider": "present",
"search": true,
"synonyms": "present",
"version": "missing"
},
"bibtex": "prefixcommons",
"download": "http://tinyurl.com/lsregistry",
"governance": {
"accepts_external_contributions": true,
"curates": true,
"curation": "community",
"imports": false,
"public_version_controlled_data": false,
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"prefix": "prefixcommons",
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"structured_data": true
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},
{
"availability": {
"alternate_providers": "missing",
"contact": "present",
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"example": "missing",
"homepage": "required",
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"provider": "missing",
"search": true,
"synonyms": "missing",
"version": "missing"
},
"bibtex": "Pampel2013",
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"curates": true,
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