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100644 50 lines (43 sloc) 1.769 kb
f726249 merged Andrew's Seq package with the tree
jchang authored
1 # MANIFEST.in
2 #
3 # This tells distutils what files to distribute.
4
33989c5 changed AUTHORS to CONTRIB
jchang authored
5 include CONTRIB
f726249 merged Andrew's Seq package with the tree
jchang authored
6 include LICENSE
7 include NEWS
8 include README
f2b2915 Update MANIFEST.in to make sure it gets the DEPRECATED file
chapmanb authored
9 include DEPRECATED
ff6039a @chapmanb Distribute MANIFEST.in so it can be used for rebuilds to PyPi
chapmanb authored
10 include MANIFEST.in
de62e1e Modified MANIFEST.in to suck up items of iterest from the Docs
chapmanb authored
11
7328334 updates for 1.10 release
jchang authored
12 recursive-include Scripts * # Include scripts.
13 recursive-include Tests * # Include regression tests.
a835722 added rule to include Bio/Cluster/*.c
jchang authored
14 recursive-include Bio *.c # Include all .c files.
7328334 updates for 1.10 release
jchang authored
15 recursive-include Bio *.h # Include headers to compile .c files.
16 recursive-include Doc *.tex # Include relevant documentation.
de62e1e Modified MANIFEST.in to suck up items of iterest from the Docs
chapmanb authored
17 recursive-include Doc *.pdf
18 recursive-include Doc *.py
19 recursive-include Doc *.html
20 recursive-include Doc *.fasta
0b19b40 Updates in preparation for the 1.30 release -- bump version numbers a…
chapmanb authored
21 recursive-include Doc Makefile
b3309fd Updates in preparation for release 1.24.
chapmanb authored
22 recursive-include Doc/examples *.aln
23 recursive-include Doc/examples *.xpk
35bd343 @peterjc Include example GenBank and Stockholm files used in Tutorial
peterjc authored
24 recursive-include Doc/examples *.gbk
25 recursive-include Doc/examples *.sth
6c7f6c3 @peterjc Include BGZF examples
peterjc authored
26 recursive-include Doc/examples *.bgz
c1b63b8 @peterjc Update MANIFEST to include Doc/examples/my_blast.xml
peterjc authored
27 recursive-include Doc/examples *.xml
4347936 @peterjc Correct typo in MANIFEST, was missing Doc/examples/my_blat.psl
peterjc authored
28 recursive-include Doc/examples *.psl
83df06f @tiagoantao simple.dnd include
tiagoantao authored
29 recursive-include Doc/examples *.dnd
889b74c Added the images in Doc/images, so that the documentation can be built
mdehoon authored
30 recursive-include Doc/images *.png
7aaf28e @peterjc Include the biopython.jpg file in the manifest
peterjc authored
31 recursive-include Doc/images *.jpg # e.g. the logo for the Tutorial
de62e1e Modified MANIFEST.in to suck up items of iterest from the Docs
chapmanb authored
32
a3c926f @peterjc Make sure Bio.Affy is included in the manifest (like the other numpy …
peterjc authored
33 # Include Bio.Cluster, Bio.Affy and Bio.KDTree
34 # Note setup.py will only install these if Numpy is installed.
ccd6468 now includes files in Bio/Cluster, regardless of whether they will
jchang authored
35 recursive-include Bio/Cluster *.py
a3c926f @peterjc Make sure Bio.Affy is included in the manifest (like the other numpy …
peterjc authored
36 recursive-include Bio/Affy *.py
6b9f35c Removed the files that were previously needed for Bio.KDTree.
mdehoon authored
37 recursive-include Bio/KDTree *.py
ccd6468 now includes files in Bio/Cluster, regardless of whether they will
jchang authored
38
2cc683c @chapmanb Clean up warnings from manifest with setuptools
chapmanb authored
39 exclude Tests/Graphics/* # Exclude test files generated by reportlab.
7fb1ec6 @peterjc Include Tests/Graphics/README in manifest (need directory)
peterjc authored
40 include Tests/Graphics/README # But include README file to make directory!
41
64e8037 Update of MANIFEST.in to make sure all files are included.
chapmanb authored
42 recursive-exclude * .cvsignore
7ef0f6d @cbrueffer Fixes for PEP8 W2 whitespace warnings.
cbrueffer authored
43 recursive-exclude * *.pyc # e.g. from running the unit tests
b141c4c make sure Martel is distributed
jchang authored
44
0b2fcb5 @peterjc No longer include EUtils
peterjc authored
45 # Make sure the required data files are included.
5dfb259 Include the DTDs in the distribution.
mdehoon authored
46 include Bio/Entrez/DTDs/*.dtd # Include DTD files for Entrez
89bb4c8 Added some DTD files from http://www.ncbi.nlm.nih.gov/pmc/pmcdoc/dtd/…
mdehoon authored
47 include Bio/Entrez/DTDs/*.ent # Include DTD files for Entrez
48 include Bio/Entrez/DTDs/*.mod # Include DTD files for Entrez
b2d9ab9 Updated NEWS for release 1.45.
mdehoon authored
49 include Bio/PopGen/SimCoal/data/*.par # Include SimCoal data files
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