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# MANIFEST.in
#
# This tells distutils what files to distribute.
include CONTRIB
include LICENSE
include NEWS
include README
include DEPRECATED
recursive-include Scripts * # Include scripts.
recursive-include Tests * # Include regression tests.
recursive-include Bio *.c # Include all .c files.
recursive-include Bio *.h # Include headers to compile .c files.
recursive-include Doc *.tex # Include relevant documentation.
recursive-include Doc *.pdf
recursive-include Doc *.txt
recursive-include Doc *.py
recursive-include Doc *.html
recursive-include Doc *.fasta
recursive-include Doc Makefile
recursive-include Doc/examples *.aln
recursive-include Doc/examples *.xpk
recursive-include Doc/images *.png
include Bio/KDTree/Makefile # Include files for building KDTree.
include Bio/KDTree/KDTree.i
include Bio/KDTree/KDTree.h
include Bio/KDTree/KDTree.cpp
include Bio/KDTree/KDTree.swig.cpp
include Bio/KDTree/README
include Bio/KDTree/*.py
# Include Bio.Cluster and Bio.Affy. setup.py will only install if Numeric
# python is installed.
recursive-include Bio/Cluster *.py
recursive-include Bio/Affy *.py *.cc
exclude Tests/Graphics/*.pdf # Exclude test files generated by reportlab.
exclude Tests/Graphics/*.eps
recursive-exclude Tests/UnitTests * # Exclude unused testing framework.
recursive-exclude * .cvsignore
recursive-include Martel * # Always distribute Martel
exclude Martel/.cvsignore
# Make sure the proper files in EUtils are included.
include Bio/EUtils/DTDs/*.dtd # Include DTD files for EUtils
include Bio/Entrez/DTDs/*.dtd # Include DTD files for Entrez
include Bio/PopGen/SimCoal/data/*.par # Include SimCoal data files
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