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executable file 35 lines (28 sloc) 1.125 kb
try :
from numpy import array
except ImportError :
from Bio import MissingExternalDependencyError
raise MissingExternalDependencyError(\
"Install NumPy if you want to use Bio.Statistics.lowess.")
from Bio.Statistics.lowess import lowess
import unittest, sys
class test_lowess(unittest.TestCase):
def test_Precomputed(self):
x = array([0.0, 1.0, 2.0, 3.0, 5.0, 9.0, 11.0])
y = x**2
# Precalculated smooth output
ys = array([-2.96219015, 1.72680044, 6.58686813,
11.62986671, 28.18598762, 86.85271581, 116.83893423 ])
# Smooth output calculated by the lowess function
output = lowess(x, y, f=2./3., iter = 3)
for precomputed, calculated in zip(ys, output):
self.assertAlmostEqual(precomputed, calculated, 4)
def testing_suite():
s = unittest.makeSuite(test_lowess)
return unittest.TestSuite([s])
def run_tests(argv):
test_suite = testing_suite()
runner = unittest.TextTestRunner(sys.stdout, verbosity = 2)
runner.run(test_suite)
if __name__ == "__main__":
sys.exit(run_tests(sys.argv))
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