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# Copyright 2001 by Gavin E. Crooks. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Unit test for Des"""
import unittest
from Bio.SCOP import Des
from Bio.SCOP.Residues import Residues
class DesTests(unittest.TestCase):
def setUp(self) :
self.filename = './SCOP/dir.des.scop.txt_test'
def testParse(self):
f = open(self.filename)
try:
count = 0
records = Des.parse(f)
for record in records:
count +=1
assert count == 20, "Wrong number of records?!"
finally:
f.close()
def testStr(self):
f = open(self.filename)
try:
for line in f:
record = Des.Record(line)
#End of line is plateform dependant. Strip it off
assert str(record).rstrip() == line.rstrip()
finally:
f.close()
def testError(self) :
corruptRec = "49268\tsp\tb.1.2.1\t-\n"
try:
record = Des.Record(corruptRec)
assert False, "Should never get here"
except ValueError, e :
pass
def testRecord(self) :
recLine = '49268\tsp\tb.1.2.1\t-\tHuman (Homo sapiens) \n'
recFields = (49268,'sp','b.1.2.1','','Human (Homo sapiens)')
record = Des.Record(recLine)
assert record.sunid == recFields[0]
assert record.nodetype == recFields[1]
assert record.sccs == recFields[2]
assert record.name == recFields[3]
assert record.description == recFields[4]
if __name__ == '__main__':
runner = unittest.TextTestRunner(verbosity = 2)
unittest.main(testRunner=runner)
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