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# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
try:
import numpy
except ImportError:
from Bio import MissingExternalDependencyError
raise MissingExternalDependencyError(\
"Install NumPy if you want to use Bio.KDTree.")
try:
from Bio.KDTree import _CKDTree
except ImportError:
from Bio import MissingExternalDependencyError
raise MissingExternalDependencyError(\
"C module in Bio.KDTree not compiled")
from Bio.KDTree.KDTree import _neighbor_test, _test
nr_points=5000
dim=3
bucket_size=5
radius=0.01
for i in range(0, 10):
_neighbor_test(nr_points, dim, bucket_size, radius)
_test(nr_points, dim, bucket_size, radius)
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