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329 lines (232 sloc) 23.733 kb
########################################
# Program: needle
# Rundate: Mon 14 Jul 2008 11:37:15
# Commandline: needle
# [-asequence] asis:TATTTTTTGGATTTTTTTCTAGATTTTCTAGGTTATTTAAACCGTTTTTTTTTAATTTAGTGTTTGAGTTTTGACAGGTCTCCACTTTGGGGGCTCCATCGCAAGGAAATTAGAATTCTTATACTTGGTTCTCTTTCCCAGGGACTCCAAGGATCTTTTCATTAGTTTGGATTTTGGTGTTTTCTTTAATTTTGTTAAGAAACAAATCCTTTCTAGAGTTTTTTCTAGCATTATGTTTTTTTTTCTCCTTATCTAAGGGGGTTTGTCGAGGTTTCTTAAATCTTTTTTTCTCTGGGTTTTAAAATTGTTTAAATTTTTTTGACCGAGGGGTTGGGGTGGTTTTCTCATGATAACAGGGGCTGGTGCTTTAGATCCTACCTCTACTGACCCGGGGTCTGCTACTGTGGCTTCTGATGAAGATCCACAGTATGCGCCTACGGAARCTCGGCAGTTTGGTGTTCGAAATCCAGCCCCTCGAATTAATACTCTTGTGCAGGTGGTTGACGAGCGCGGTATCGAATTGCAAAATTTGGGGCGGGACCCCGCTGTTCCGCCTGTTGCTCCGGGGGGGGCAGGTTAATCCTCCAGTCGTCTCCTTTTGGGGGCGTCTTTGACGGGGGTTTAAATCTTTCTTTGGTTGTGGATAGGATTTTTTTTCTAATATCGATCCTACCTGTTTTGGCGGGGCTATTACTTTGTTACTTTTGACCGAAATTTTAATGGAAATTTCTTTGATTCAAATGAATCCCTTAGTTTTCCAACACTTTTTTTTGGTTTTTTTAGGGATAGTCTACGCTGTGGTTAGGTTTGGTTTTATTGGGGGCTTGGTTTGGGCCCACCCCAAATAGGGAGTGGGGGTATGACCTCAGATAGACGAGCTTATTTTAGGGCGGCGACTATAATTATTTCGTTTCCTACAAGGATTAAAGTTTTTTCTTTTACTGTGGGAGGGGGTTTGGTATTAAGAAACGCTAGTCCGGATGTGGCTCTCCATGATACTTATTGTGTAGTAGCTCATTTTCATTATGTTCTTCGAATGGGAGCAGTCATTGGTATTTTTTTGGTTTTTTTTTGAAATTTTTAGGTTATTTAGACCATTTTTTTTTGTTTCGCTAATTAGAATTTTATTAGCCTTTGGTTTTTTTTTATTTTTTGGGGTTAAGACAAGGTGTCGTTGAATTAGTTTAGCAAAATACTGCTTAAGGTAGGCTATAGGATCTACCTTTTATCTTTCTAATCTTTTGTTTTAGTATAATTGGTCTTCGATTCAACAATTTTTAGTCTTCAGTCTTTTTTTTTATTTTGAAAAGGTTTTAACACTCTTGGTTTTGGAGGCTTTGGCTTTCTTCTTACTCTTAGGAGGATGGGCGCTAGAAAGAGTTTTAAGAGGGTGTGAAAGGGGGTTAATAGCAGGATTTGCTTTTTTAACTTATACTGGTTCGTAACGCATTAGCTCAACTCTCTCTTGTAGTTCTAGCAGCCGCCTTTTCTTTGTTGGGGGAGGGTTTAGGAGGAGTCTTTTTTTTCCTAACCCAAGGTGTTTCTTTCTTTTTTTCTTTAAAGTTCTTGACTGTTGGCACTTGTCTCCATAAATTTTCTTTCTTGTAAAGGGCTCCTAAGGCTTCTTGTTTCTGAATTCCTCTTTTCTTTTATTCTGTTTTGAGCTTATTTTTCTTGTTAGCTATTACGTAGGCATAGGGCAAATAATTTTTTTTTCTGCTCTCATTATTCCTTCTCCCTGCTTGTTTCACCCTGTGGGCTCTTTGAGCCCCACTAAGTGAGCGGGGCTCCTGCTTCCGCTCAATTAAATTTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTCAGATTGATGGACCTAATCAATCAATTGTATCGCTATACAATCTAGTACCCCTACCAGGGTACCAAGAGAGAGATAACTAGGGTGAATACTACGACTTAGATGTAGTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTAYATATTTGTTCATTACATATTTGTTGACTTTTCTATCTCTGCTTTTACTTTTTTATTTATTTTTAAATCTTTTTAACTTCAGCTGTTTTTCCTTATCTATTTGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTTTGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCATTATAGTTTATCAGTTGAGAGGAATTTAGTATAAGAAGGCCCATTGGGGCTCTTGTCTTATCCAAGAACTGGTAAGATTTAATTCTACCGGGACGGTAGAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGCTATAGGGACTAGGTGCTAGGGAGGTATTAGGGCACCGCTCTTTATACAATCTCCATAGATACAACCAGGTCAACTAGGACAACGGAGGACGTTGACAGAGCATAAATAGCGATAGCGTACAAGATAWAATAGGGGCAGTGGTAGCGAAGCGTAGAAGAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAATATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAAGGGTGTGGCAAAGAGAAATGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATTATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTTAACTCAATAGGAGGAGCTGGGGTAGAACGTTTCTAGTTCGGGGGTAACCGCAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAGTTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGTGATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAACCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCTTTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGGTTTAAACTCCTTTGGCAAAGATTGACTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAGTCTTTATWAACACCAGTAGGTTCAATAAGGTAGTAATCCAATAGAATGGAAAACTCAAGATCTAATCTCTCGAYTTCCTAGTGTCATGGAAATCAGCCAGGTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGACTAGCGAGAGAGTCTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACGGAACACTAGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTCTGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTAGGGGGAATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTCGCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCTAACTTGATAATTCGCATGAAATAATTTTTTTATTTTGTTTTTTTTTTGCTCTTAATTTTAGWGGGRGTGTTTATTTTTATTCTAATAAAAAGGATCCGTTGAA
# [-bsequence] asis:TTATTAATCTTATGGTTTTGCCGTAAAATTTCTTTCTTTATTTTTTATTGTTAGGATTTTGTTGATTTTATTTTTCTCAAGAATTTTTAGGTCAATTAGACCGGCTTATTTTTTTGTCAGTGTTTAAAGTTTTATTAATTTTTGGGGGGGGGGGGAGACGGGGTGTTATCTGAATTAGTTTTTGGGAGTCTCTAGACATCTCATGGGTTGGCCGGGGGCCTGCCGTCTATAGTTCTTATTCCTTTTAAGGGAGTAAGAATTTCGATTCAGCAACTTTAGTTCACAGTCTTTTTTTTTATTAAGAAAGGTTTTAATATTCTTGTGGTTTTGAACCTTTAGGTTTCTTTCTTTACCTTCGAGGGATTGGGCACTAGAATGAGTTTTAAGAGTGTGTGAAAGGGGGCTTGATAGCAGGGGAATGCTTTTTTAACTTATACTGGCTCGTAACGCATCAGTTCAACTCTCTCTTGCAGTTCTAGCAGCCGCCTTTTTTTTGTTGGGGGGGGGTTAAGAGAGTGTTTTTTTTCTAATCCAAGGGTCTTACTTTCTTTCTTTCTTTAAAAATTCTTTGGCTGTCGACACCTTTCTCTCCCGTCAGTCTCATGGTTTCTGGCTCTCTTGGGCTTTTTTTGTTTGTGAATGCCTCTTTTTTTTATTCTGTTTTGAGCTTATTTTTCTTGTTTACTATTACGTAGGTATAGGGCAAATAATTTTTTTTTCGCGTCTCTTGGCATGCCCATTACTCTAGTTTTATTCCCGGGCTTCTTCTCTCACCCTAGAGGGCTCTTTGAGCCCACACTCAAGTGAGCGGGGCTCCCGCTTCCGCTCAATTAAATTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTCAGATTGATGGACCTAGTCAATCAATTGTATCGCTATACAATCTAGTACCCCTACCAGGGTACCAGGAGAGAGATAACTAGGGTGAATACTACGACTTAGATGTACTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTATATATTTGCTCATTACATATTTGTTGATTTTTCTATGTCCGCTTTACTTTTTATATTTTTTTAACTTCAGCTGTTTTTCCTTATCTATTTGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTTTGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCATTATAGTCTATCAGTTGAGAGGAATTTAGTATAAGAAAGCCTGTCAGGGCTCTTGCCTTATCCAAGAACTGGTAAGGATTTCTTGACAGAGGGACTCTGTCAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGTTATAAGGCTTAGGTGCTTGGAGGGTATTAGGGCACCGCTCTTAATACAGTCTCCATAGGTGTAACCAGGTCAACTAGGACAACGGAGGACGTTGACAAAGCATGGATAGCGATAGCGTAGAAGATAAAATGGGGCAGTGGTAGCGAAGCGTAGAAGAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAATATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAGGGGAGTGGCAAAGAGAAGTGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATTATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTTAACTCAATAGGAGGAGCTGGGGTAGAACGTATCTAGTTCGGGGGTAACCGCAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAGTTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGTGATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAACCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCTTTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGGTTTTAAACTCCTTTGGCAAAGATTGATTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAGTCTTTATTAGCACCAGTAGGTTCAATAAGGTAGTAGTCCAATAGAATGGAAAACTCGAGATCTAATCTCTCGATTTCCTAGTGTCATGGAAATCAGCCAGGTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGGCTAGCGAGAGAGTCTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACGGAACACTTGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTCTGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTGGGGGGAATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTCGCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCTAACTTGATAATTCGCATGAAATAATTTTTTATTTGTTTTTTTTTTTGCTCTTAATTTTAGAGGATGTTTATTTTTATTCTAATAAAAAGGATCCGTTGAA
# -filter
# Align_format: srspair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: asis
# 2: asis
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3653
# Identity: 2296/3653 (62.9%)
# Similarity: 2301/3653 (63.0%)
# Gaps: 1202/3653 (32.9%)
# Score: 10155.0
#
#
#=======================================
asis 1 TATTTTTTGGATTTTTTTCTAGATTTTCTAGGTTATTTAAACCGTTTTTT 50
asis 0 -------------------------------------------------- 0
asis 51 TTTAATTTAGTGTTTGAGTTTTGACAGGTCTCCACTTTGGGGGCTCCATC 100
asis 0 -------------------------------------------------- 0
asis 101 GCAAGGAAATTAGAATTCTTATACTTGGTTCTCTTTCCCAGGGACTCCAA 150
asis 0 -------------------------------------------------- 0
asis 151 GGATCTTTTCATTAGTTTGGATTTTGGTGTTTTCTTTAATTTTGTTAAGA 200
asis 0 -------------------------------------------------- 0
asis 201 AACAAATCCTTTCTAGAGTTTTTTCTAGCATTATGTTTTTTTTTCTCCTT 250
asis 0 -------------------------------------------------- 0
asis 251 ATCTAAGGGGGTTTGTCGAGGTTTCTTAAATCTTTTTTTCTCTGGGTTTT 300
asis 0 -------------------------------------------------- 0
asis 301 AAAATTGTTTAAATTTTTTTGACCGAGGGGTTGGGGTGGTTTTCTCATGA 350
asis 0 -------------------------------------------------- 0
asis 351 TAACAGGGGCTGGTGCTTTAGATCCTACCTCTACTGACCCGGGGTCTGCT 400
asis 0 -------------------------------------------------- 0
asis 401 ACTGTGGCTTCTGATGAAGATCCACAGTATGCGCCTACGGAARCTCGGCA 450
asis 0 -------------------------------------------------- 0
asis 451 GTTTGGTGTTCGAAATCCAGCCCCTCGAATTAATACTCTTGTGCAGGTGG 500
asis 0 -------------------------------------------------- 0
asis 501 TTGACGAGCGCGGTATCGAATTGCAAAATTTGGGGCGGGACCCCGCTGTT 550
asis 0 -------------------------------------------------- 0
asis 551 CCGCCTGTTGCTCCGGGGGGGGCAGGTTAATCCTCCAGTCGTCTCCTTTT 600
asis 0 -------------------------------------------------- 0
asis 601 GGGGGCGTCTTTGACGGGGGTTTAAATCTTTCTTTGGTTGTGGATAGGAT 650
asis 0 -------------------------------------------------- 0
asis 651 TTTTTTTCTAATATCGATCCTACCTGTTTTGGCGGGGCTATTACTTTGTT 700
asis 0 -------------------------------------------------- 0
asis 701 ACTTTTGACCGAAATTTTAATGGAAATTTCTTTGATTCAAATGAATCCCT 750
asis 0 -------------------------------------------------- 0
asis 751 TAGTTTTCCAACACTTTTTTTTGGTTTTTTTAGGGATAGTCTACGCTGTG 800
asis 0 -------------------------------------------------- 0
asis 801 GTTAGGTTTGGTTTTATTGGGGGCTTGGTTTGGGCCCACCCCAAATAGGG 850
asis 0 -------------------------------------------------- 0
asis 851 AGTGGGGGTATGACCTCAGATAGACGAGCTTATTTTAGGGCGGCGACTAT 900
asis 0 -------------------------------------------------- 0
asis 901 AATTATTTCGTTTCCTACAAGGATTAAAGTTTTTTCTTTTACTGTGGGAG 950
asis 0 -------------------------------------------------- 0
asis 951 GGGGTTTGGTATTAAGAAACGCTAGTCCGGATGTGGCTCTCCATGATACT 1000
.|||||| .||
asis 1 --------TTATTAA--------------------------------TCT 10
asis 1001 TATTGT------GTAGTAGCTCATTTTCATTATGTTCTTCGAATGGGAGC 1044
|||.|| |||..|..|| ||||.||||.||.| ||.|
asis 11 TATGGTTTTGCCGTAAAATTTC--TTTCTTTATTTTTT----ATTG---- 50
asis 1045 AGTCATTGGTATTTTTTTGGTTTTTTTTT------GAAATTTTTAGGTTA 1088
||.|.|||||.|||.||||.|||| | |||||||||||.|
asis 51 -----TTAGGATTTTGTTGATTTTATTTTTCTCAAG-AATTTTTAGGTCA 94
asis 1089 TTTAGACC-----ATTTTTTTTT--GTTTCGCTAATTAGAATTTTATTAG 1131
.||||||| ||||||||.| ||.| |||.|.||||||||
asis 95 ATTAGACCGGCTTATTTTTTTGTCAGTGT------TTAAAGTTTTATTA- 137
asis 1132 CCTTTGGTTTTTTTTTATTTTT----TGGGGTTAAGACAAGGTGTCGT-T 1176
|||||| .||||...||||..|||||..| |
asis 138 ----------------ATTTTTGGGGGGGGGGGGAGACGGGGTGTTATCT 171
asis 1177 GAATTAGTTTAGCAAAATACTGCTTAAGGTAGGCTATA------------ 1214
|||||||||| || ||.||.||.||
asis 172 GAATTAGTTT-------------TT--GGGAGTCTCTAGACATCTCATGG 206
asis 1215 ---------GGATCTACCTTTTATCTTTCTAAT--CTTTT----GTTTTA 1249
||..||.||.|.|||..||||.|| ||||| | |
asis 207 GTTGGCCGGGGGCCTGCCGTCTATAGTTCTTATTCCTTTTAAGGG----A 252
asis 1250 GT-ATAATTGGTCTTCGATTCAACAATTTTTAGTCTTCAGTCTTTTTTTT 1298
|| |.||| |||||||||.||| .||||||...|||||||||||||
asis 253 GTAAGAAT-----TTCGATTCAGCAA-CTTTAGTTCACAGTCTTTTTTTT 296
asis 1299 TATTTTGAAAAGGTTTTAACACTCT--TGGTTTTGGAGGCTTTGGCTTTC 1346
||||..| |||||||||||.|.||| ||||||| ||..||||.|.||||
asis 297 TATTAAG-AAAGGTTTTAATATTCTTGTGGTTTT-GAACCTTTAGGTTTC 344
asis 1347 TT--CTTACTCTTAGGAGGA-TGGGCGCTAGAAAGAGTTTTAAGAGGGTG 1393
|| .|||| |||.|..||| |||||.||||||.||||||||||||.|||
asis 345 TTTCTTTAC-CTTCGAGGGATTGGGCACTAGAATGAGTTTTAAGAGTGTG 393
asis 1394 TGAAAGGGGG-TTAATAGCAGG---ATTTGCTTTTTTAACTTATACTGGT 1439
|||||||||| ||.|||||||| | |||||||||||||||||||||.
asis 394 TGAAAGGGGGCTTGATAGCAGGGGAA--TGCTTTTTTAACTTATACTGGC 441
asis 1440 TCGTAACGCATTAGCTCAACTCTCTCTTGTAGTTCTAGCAGCCGCCTTTT 1489
|||||||||||.||.||||||||||||||.||||||||||||||||||||
asis 442 TCGTAACGCATCAGTTCAACTCTCTCTTGCAGTTCTAGCAGCCGCCTTTT 491
asis 1490 CTTTGTTGGGGGAGGGTTTAGGAGGAGTCTTTTTTTTCCTAACCCAA-GG 1538
.|||||||||||.|||||.|| .||||.|||||||| ||||.|||| ||
asis 492 TTTTGTTGGGGGGGGGTTAAG--AGAGTGTTTTTTTT-CTAATCCAAGGG 538
asis 1539 TGTTTCTTTCTTTTTTTCTTT-AAAGTTC-TTGACTGTTGGCAC--TTGT 1584
|.||.||||||||.||||||| |||.||| |||.||||.|.||| ||.|
asis 539 TCTTACTTTCTTTCTTTCTTTAAAAATTCTTTGGCTGTCGACACCTTTCT 588
asis 1585 CTCCATAAATTTTC----TTTCTTGTAAAGGGCTC-CTAAGGC--TTCTT 1627
||||....|.|.|| ||||| ||||| ||..||| ||.||
asis 589 CTCCCGTCAGTCTCATGGTTTCT-------GGCTCTCTTGGGCTTTTTTT 631
asis 1628 GTTTCTGAATTCCTCTTTTCTTTTATTCTGTTTTGAGCTTATTTTTCTTG 1677
||||.|||||.|||||||| ||||||||||||||||||||||||||||||
asis 632 GTTTGTGAATGCCTCTTTT-TTTTATTCTGTTTTGAGCTTATTTTTCTTG 680
asis 1678 TTAGCTATTACGTAGGCATAGGGCAAATAATTTTTTTTTCTG---CTCT- 1723
||..||||||||||||.||||||||||||||||||||||| | ||||
asis 681 TTTACTATTACGTAGGTATAGGGCAAATAATTTTTTTTTC-GCGTCTCTT 729
asis 1724 --------CATTA-------TTCCTTCTCC---CTGCTTGTTTCACCCT- 1754
||||| ||..||| || ||.|||.|.|||||||
asis 730 GGCATGCCCATTACTCTAGTTTTATTC-CCGGGCTTCTTCTCTCACCCTA 778
asis 1755 GTGGGCTCTTTGAGCCC-CACT-AAGTGAGCGGGGCTCCTGCTTCCGCTC 1802
|.||||||||||||||| |||| ||||||||||||||||.||||||||||
asis 779 GAGGGCTCTTTGAGCCCACACTCAAGTGAGCGGGGCTCCCGCTTCCGCTC 828
asis 1803 AATTAAATTTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTC 1852
||||||| ||||||||||||||||||||||||||||||||||||||||||
asis 829 AATTAAA-TTTGGTGGGTATTGAGTCTCAGAGGGACTATGATATAGGTTC 877
asis 1853 AGATTGATGGACCTAATCAATCAATTGTATCGCTATACAATCTAGTACCC 1902
|||||||||||||||.||||||||||||||||||||||||||||||||||
asis 878 AGATTGATGGACCTAGTCAATCAATTGTATCGCTATACAATCTAGTACCC 927
asis 1903 CTACCAGGGTACCAAGAGAGAGATAACTAGGGTGAATACTACGACTTAGA 1952
||||||||||||||.|||||||||||||||||||||||||||||||||||
asis 928 CTACCAGGGTACCAGGAGAGAGATAACTAGGGTGAATACTACGACTTAGA 977
asis 1953 TGTAGTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTAYA 2002
||||.|||||||||||||||||||||||||||||||||||||||||||.|
asis 978 TGTACTGTTTAAGTTTCTACGGGCTACAGAGAAGCTACCCGCAGGGTATA 1027
asis 2003 TATTTGTTCATTACATATTTGTTGACTTTTCTATCTCTGCTTTTACTTTT 2052
||||||.||||||||||||||||||.||||||||.||.|| |||||||||
asis 1028 TATTTGCTCATTACATATTTGTTGATTTTTCTATGTCCGC-TTTACTTTT 1076
asis 2053 T-TATTTATTTTTAAATCTTTTTAACTTCAGCTGTTTTTCCTTATCTATT 2101
| |||| ||||||||||||||||||||||||||||||||
asis 1077 TATATT------------TTTTTAACTTCAGCTGTTTTTCCTTATCTATT 1114
asis 2102 TGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTT 2151
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1115 TGACGTAGGCATAGGAAAGTTAACGAATTTTGTAATATTTTTAATTATTT 1164
asis 2152 TGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCA 2201
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1165 TGTATAGTATACAGGGTAGTGGTATGTAATAGGTAAATTCCATAAGTTCA 1214
asis 2202 TTATAGTTTATCAGTTGAGAGGAATTTAGTATAAGAAGGCCCATTGGGGC 2251
|||||||.|||||||||||||||||||||||||||||.|||..|..||||
asis 1215 TTATAGTCTATCAGTTGAGAGGAATTTAGTATAAGAAAGCCTGTCAGGGC 1264
asis 2252 TCTTGTCTTATCCAAGAACTGGTAA-GATTTAATTCT----ACCGGGA-- 2294
|||||.||||||||||||||||||| ||| |||| |..||||
asis 1265 TCTTGCCTTATCCAAGAACTGGTAAGGAT----TTCTTGACAGAGGGACT 1310
asis 2295 CGGTAGAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGCTATAGG 2344
|.|| .|||||||||||||||||||||||||||||||||||||.||||.|
asis 1311 CTGT-CAAATCGGGCAGAGCATGATCTATTTCTTCGGGTATGGTTATAAG 1359
asis 2345 GACTAGGTGCTAGGGAGGTATTAGGGCACCGCTCTTTATACAATCTCCAT 2394
|..||||||||.||..||||||||||||||||||||.|||||.|||||||
asis 1360 GCTTAGGTGCTTGGAGGGTATTAGGGCACCGCTCTTAATACAGTCTCCAT 1409
asis 2395 AGATACAACCAGGTCAACTAGGACAACGGAGGACGTTGACAGAGCATAAA 2444
||.|..|||||||||||||||||||||||||||||||||||.|||||..|
asis 1410 AGGTGTAACCAGGTCAACTAGGACAACGGAGGACGTTGACAAAGCATGGA 1459
asis 2445 TAGCGATAGCGTACAAGATAWAATAGGGGCAGTGGTAGCGAAGCGTAGAA 2494
|||||||||||||.||||||.||| |||||||||||||||||||||||||
asis 1460 TAGCGATAGCGTAGAAGATAAAAT-GGGGCAGTGGTAGCGAAGCGTAGAA 1508
asis 2495 GAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAAT 2544
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1509 GAAAAAATAAGAGTATTGTTTGTAAATAATTCTTTTTTTAGTTTTTAAAT 1558
asis 2545 ATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAAGGGTGTGGCA 2594
|||||||||||||||||||||||||||||||||||||||.|||.||||||
asis 1559 ATTCTTTTTTTAGGTGGTGTGTGGTTAGGTATGGGGTTAGGGGAGTGGCA 1608
asis 2595 AAGAGAAATGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATT 2644
|||||||.||||||||||||||||||||||||||||||||||||||||||
asis 1609 AAGAGAAGTGTTTATTAAACATTCTTATGGCCGTAGATAGCATATCGATT 1658
asis 2645 ATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTT 2694
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1659 ATACGAGACCTTCGTAAGATCAATCCCCACTAGCATTGCTCATACAGGTT 1708
asis 2695 AACTCAATAGGAGGAGCTGGGGTAGAACGTTTCTAGTTCGGGGGTAACCG 2744
||||||||||||||||||||||||||||||.|||||||||||||||||||
asis 1709 AACTCAATAGGAGGAGCTGGGGTAGAACGTATCTAGTTCGGGGGTAACCG 1758
asis 2745 CAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAG 2794
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1759 CAGTTCAATGAAAGTGACGACGTCGGATGGAACAAACTTAATACCACCAG 1808
asis 2795 TTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGT 2844
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1809 TTGTGCTAACGATTGTTATCTCAATCTATCCCAACAGGCCCCCAGGTAGT 1858
asis 2845 GATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAA 2894
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1859 GATGAGTGGTGGAATGGTACAGGGTACCAGTGGGTGAAGAGCGTCACGAA 1908
asis 2895 CCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCT 2944
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 1909 CCAGGGAATACGGAGTACAGAGTTGAGCGCCCGGGGCTCCGCCCCCGGCT 1958
asis 2945 TTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGG-TTTAAACTCC 2993
||||||||||||||||||||||||||||||||||||||| ||||||||||
asis 1959 TTTATAGCGCGAGACGTGGTCAGTCGATTCAGCGTTAGGTTTTAAACTCC 2008
asis 2994 TTTGGCAAAGATTGACTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAG 3043
|||||||||||||||.||||||||||||||||||||||||||||||||||
asis 2009 TTTGGCAAAGATTGATTCTAGCGATCCAGAGACCCTGCCTGGCATAAAAG 2058
asis 3044 TCTTTATWAACACCAGTAGGTTCAATAAGGTAGTAATCCAATAGAATGGA 3093
|||||||.|.|||||||||||||||||||||||||.||||||||||||||
asis 2059 TCTTTATTAGCACCAGTAGGTTCAATAAGGTAGTAGTCCAATAGAATGGA 2108
asis 3094 AAACTCAAGATCTAATCTCTCGAYTTCCTAGTGTCATGGAAATCAGCCAG 3143
||||||.||||||||||||||||.||||||||||||||||||||||||||
asis 2109 AAACTCGAGATCTAATCTCTCGATTTCCTAGTGTCATGGAAATCAGCCAG 2158
asis 3144 GTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGACTAGCGAGAGAGT 3193
||||||||||||||||||||||||||||||||||||.|||||||||||||
asis 2159 GTTCTCTTCATCTGCAACAGTAGAAGAAGAAGAGAGGCTAGCGAGAGAGT 2208
asis 3194 CTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACG 3243
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 2209 CTTATGGCGGAGACGCTAAGGCTTAAATGTAATGTAGATAACCCCTTACG 2258
asis 3244 GAACACTAGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTC 3293
|||||||.||||||||||||||||||||||||||||||||||||||||||
asis 2259 GAACACTTGAGTGCGACGTAGACTACATAATCCCTCAGGGATATTAGCTC 2308
asis 3294 TGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTAGGGGGA 3343
|||||||||||||||||||||||||||||||||||||||||||.||||||
asis 2309 TGCTCGATTAACAATAGCATACTTTGTTACACGGAGTGTATCTGGGGGGA 2358
asis 3344 ATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTC 3393
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 2359 ATAATACTAACTTACTTAGCACTATCGCGATGCTACGCATTCGCTCTTTC 2408
asis 3394 GCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCT 3443
||||||||||||||||||||||||||||||||||||||||||||||||||
asis 2409 GCTAAATAAGATACGACGATGAGTGGTTGGTGGAGAGAATAACCGATTCT 2458
asis 3444 AACTTGATAATTCGCATGAAATAATTTTTTTATTTTGTTTTTTTTTTGCT 3493
|||||||||||||||||||||||| ||||||||||..|||||||||||||
asis 2459 AACTTGATAATTCGCATGAAATAA-TTTTTTATTTGTTTTTTTTTTTGCT 2507
asis 3494 CTTAATTTTAGWGGGRGTGTTTATTTTTATTCTAATAAAAAGGATCCGTT 3543
|||||||||||.|| .|||||||||||||||||||||||||||||||||
asis 2508 CTTAATTTTAGAGG--ATGTTTATTTTTATTCTAATAAAAAGGATCCGTT 2555
asis 3544 GAA 3546
|||
asis 2556 GAA 2558
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