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########################################
# Program: water
# Rundate: Sat Apr 04 2009 22:08:44
# Commandline: water
# -asequence asis:ACACACTCACACACACTTGGTCAGAGATGCTGTGCTTCTTGGAAGCAAGGNCTCAAAGGCAAGGTGCACGCAGAGGGACGTTTGAGTCTGGGATGAAGCATGTNCGTATTATTTATATGATGGAATTTCACGTTTTTATG
# -bsequence asis:CGTTTGAGTACTGGGATG
# -gapopen 10
# -gapextend 0.5
# -filter
# Align_format: srspair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: asis
# 2: asis
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 18
# Identity: 17/18 (94.4%)
# Similarity: 17/18 (94.4%)
# Gaps: 1/18 ( 5.6%)
# Score: 75.0
#
#
#=======================================
asis 79 CGTTTGAGT-CTGGGATG 95
||||||||| ||||||||
asis 1 CGTTTGAGTACTGGGATG 18
#---------------------------------------
#---------------------------------------
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