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MEME - Motif discovery tool
********************************************************************************
MEME version 3.0 (Release date: 2004/08/18 09:07:01)
For further information on how to interpret these results or to get
a copy of the MEME software please access http://meme.sdsc.edu.
This file may be used as input to the MAST algorithm for searching
sequence databases for matches to groups of motifs. MAST is available
for interactive use and downloading at http://meme.sdsc.edu.
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REFERENCE
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If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
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TRAINING SET
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DATAFILE= adh.s
ALPHABET= ACDEFGHIKLMNPQRSTVWY
Sequence name Weight Length Sequence name Weight Length
------------- ------ ------ ------------- ------ ------
2BHD_STREX 1.0000 255 3BHD_COMTE 1.0000 253
ADH_DROME 1.0000 255 AP27_MOUSE 1.0000 244
BA72_EUBSP 1.0000 249 BDH_HUMAN 1.0000 343
BPHB_PSEPS 1.0000 275 BUDC_KLETE 1.0000 241
DHES_HUMAN 1.0000 327 DHGB_BACME 1.0000 262
DHII_HUMAN 1.0000 292 DHMA_FLAS1 1.0000 270
ENTA_ECOLI 1.0000 248 FIXR_BRAJA 1.0000 278
GUTD_ECOLI 1.0000 259 HDE_CANTR 1.0000 906
HDHA_ECOLI 1.0000 255 LIGD_PSEPA 1.0000 305
NODG_RHIME 1.0000 245 RIDH_KLEAE 1.0000 249
YINL_LISMO 1.0000 248 YRTP_BACSU 1.0000 238
CSGA_MYXXA 1.0000 166 DHB2_HUMAN 1.0000 387
DHB3_HUMAN 1.0000 310 DHCA_HUMAN 1.0000 276
FABI_ECOLI 1.0000 262 FVT1_HUMAN 1.0000 332
HMTR_LEIMA 1.0000 287 MAS1_AGRRA 1.0000 476
PCR_PEA 1.0000 399 RFBB_NEIGO 1.0000 346
YURA_MYXXA 1.0000 258
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COMMAND LINE SUMMARY
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This information can also be useful in the event you wish to report a
problem with the MEME software.
command: meme adh.s -mod oops -protein -nmotifs 2
model: mod= oops nmotifs= 2 evt= inf
object function= E-value of product of p-values
width: minw= 8 maxw= 50 minic= 0.00
width: wg= 11 ws= 1 endgaps= yes
nsites: minsites= 33 maxsites= 33 wnsites= 0.8
theta: prob= 1 spmap= pam spfuzz= 120
em: prior= dmix b= 0 maxiter= 50
distance= 1e-05
data: n= 9996 N= 33
sample: seed= 0 seqfrac= 1
Dirichlet mixture priors file: prior30.plib
Letter frequencies in dataset:
A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052
L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083
W 0.010 Y 0.027
Background letter frequencies (from dataset with add-one prior applied):
A 0.111 C 0.012 D 0.050 E 0.055 F 0.036 G 0.090 H 0.018 I 0.057 K 0.052
L 0.092 M 0.027 N 0.041 P 0.041 Q 0.029 R 0.049 S 0.064 T 0.057 V 0.083
W 0.010 Y 0.027
********************************************************************************
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MOTIF 1 width = 29 sites = 33 llr = 1118 E-value = 3.6e-165
********************************************************************************
--------------------------------------------------------------------------------
Motif 1 Description
--------------------------------------------------------------------------------
Simplified A :162:56112:1:215:::4:::::::11
pos.-specific C :1:::::::::::1:::::::::::1:1:
probability D ::::::::1:::1::::2:::::::::::
matrix E ::::::::1:::21:::5:111:::::::
F :::::31:::2:::::1::::::::::::
G :2:::13::4:::1:1:::11:5:1:11:
H :::::::::1::1:::1::::1:::::::
I :::::::11:::::::::1::::5:2:13
K ::::9:::1:::2:::1::121::1:1::
L :::::::31:6:1:5:215::1:::::12
M ::1::::1:2:1::2:1:1::::::::::
N :::::::::1::::::::::::2:1:41:
P ::::::::::::::::::::3::::::::
Q ::::::::::::1::11:::11:::::::
R ::::::::2:::3::22::21:1:4:1::
S :426::1:11:213:::::1:11:::21:
T :1:2::::1::3:1::::::11::1:11:
V :::::::41::2:1::1:1::::316123
W :::::1:::::::::::::::::::::::
Y 9:::::::::::::::::2::2:::::::
bits 6.7
6.0
5.4
4.7 *
Information 4.0 * *
content 3.4 * *
(48.9 bits) 2.7 * ** *
2.0 * **** * * * * *
1.3 ******** ******* ** * ***** *
0.7 *****************************
0.0 -----------------------------
Multilevel YSASKAAVxGLTRSLAxELAPxGIRVNVV
consensus FGL FSE MR D V I
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------------------
YRTP_BACSU 155 1.64e-22 GQRGAAVTSA YSASKFAVLGLTESLMQEVRKHNIRVSAL TPSTVASDMS
AP27_MOUSE 149 6.32e-22 AHVTFPNLIT YSSTKGAMTMLTKAMAMELGPHKIRVNSV NPTVVLTDMG
NODG_RHIME 152 1.13e-21 GAIGNPGQTN YCASKAGMIGFSKSLAQEIATRNITVNCV APGFIESAMT
BUDC_KLETE 152 4.04e-21 GHVGNPELAV YSSSKFAVRGLTQTAARDLAPLGITVNGF CPGIVKTPMW
FIXR_BRAJA 189 6.12e-21 SRVHPFAGSA YATSKAALASLTRELAHDYAPHGIRVNAI APGEIRTDML
DHGB_BACME 160 7.52e-20 WKIPWPLFVH YAASKGGMKLMTETLALEYAPKGIRVNNI GPGAINTPIN
HMTR_LEIMA 193 3.35e-19 TNQPLLGYTI YTMAKGALEGLTRSAALELAPLQIRVNGV GPGLSVLVDD
YURA_MYXXA 160 4.82e-19 AGFRGLPATR YSASKAFLSTFMESLRVDLRGTGVRVTCI YPGFVKSELT
GUTD_ECOLI 154 4.82e-19 GKVGSKHNSG YSAAKFGGVGLTQSLALDLAEYGITVHSL MLGNLLKSPM
2BHD_STREX 152 1.11e-18 GLMGLALTSS YGASKWGVRGLSKLAAVELGTDRIRVNSV HPGMTYTPMT
HDHA_ECOLI 159 1.25e-18 AENKNINMTS YASSKAAASHLVRNMAFDLGEKNIRVNGI APGAILTDAL
DHB2_HUMAN 232 2.23e-18 GGAPMERLAS YGSSKAAVTMFSSVMRLELSKWGIKVASI QPGGFLTNIA
DHMA_FLAS1 165 5.53e-18 SFMAEPEAAA YVAAKGGVAMLTRAMAVDLARHGILVNMI APGPVDVTGN
HDE_CANTR 467 9.65e-18 GIYGNFGQAN YSSSKAGILGLSKTMAIEGAKNNIKVNIV APHAETAMTL
FVT1_HUMAN 186 2.86e-17 GQLGLFGFTA YSASKFAIRGLAEALQMEVKPYNVYITVA YPPDTDTPGF
BDH_HUMAN 208 8.20e-17 GRMANPARSP YCITKFGVEAFSDCLRYEMYPLGVKVSVV EPGNFIAATS
RIDH_KLEAE 160 9.09e-17 GVVPVIWEPV YTASKFAVQAFVHTTRRQVAQYGVRVGAV LPGPVVTALL
DHES_HUMAN 155 1.37e-16 GLMGLPFNDV YCASKFALEGLCESLAVLLLPFGVHLSLI ECGPVHTAFM
BA72_EUBSP 157 2.52e-16 GIFGSLSGVG YPASKASVIGLTHGLGREIIRKNIRVVGV APGVVNTDMT
LIGD_PSEPA 157 1.21e-15 GFMGSALAGP YSAAKAASINLMEGYRQGLEKYGIGVSVC TPANIKSNIA
DHII_HUMAN 183 1.61e-15 GKVAYPMVAA YSASKFALDGFFSSIRKEYSVSRVNVSIT LCVLGLIDTE
ENTA_ECOLI 144 1.77e-15 AHTPRIGMSA YGASKAALKSLALSVGLELAGSGVRCNVV SPGSTDTDMQ
3BHD_COMTE 151 7.81e-15 SWLPIEQYAG YSASKAAVSALTRAAALSCRKQGYAIRVN SIHPDGIYTP
DHB3_HUMAN 198 8.55e-15 ALFPWPLYSM YSASKAFVCAFSKALQEEYKAKEVIIQVL TPYAVSTAMT
RFBB_NEIGO 165 1.47e-14 ETTPYAPSSP YSASKAAADHLVRAWQRTYRLPSIVSNCS NNYGPRQFPE
YINL_LISMO 154 3.24e-14 GLKAYPGGAV YGATKWAVRDLMEVLRMESAQEGTNIRTA TIYPAAINTE
BPHB_PSEPS 153 1.80e-12 GFYPNGGGPL YTAAKQAIVGLVRELAFELAPYVRVNGVG PGGMNSDMRG
CSGA_MYXXA 88 2.10e-12 AANTDGGAYA YRMSKAALNMAVRSMSTDLRPEGFVTVLL HPGWVQTDMG
FABI_ECOLI 159 4.15e-12 AERAIPNYNV MGLAKASLEANVRYMANAMGPEGVRVNAI SAGPIRTLAA
ADH_DROME 152 5.20e-12 GFNAIYQVPV YSGTKAAVVNFTSSLAKLAPITGVTAYTV NPGITRTTLV
DHCA_HUMAN 193 4.80e-10 HQKEGWPSSA YGVTKIGVTVLSRIHARKLSEQRKGDKIL LNACCPGWVR
PCR_PEA 26 2.77e-08 PKEGKIGASL KDSTLFGVSSLSDSLKGDFTSSALRCKEL RQKVGAVRAE
MAS1_AGRRA 349 5.72e-08 VDYQRFHLQW YINCVAPLRMTELCLPHLYETGSGRIVNI NSMSGQRVLN
--------------------------------------------------------------------------------
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Motif 1 block diagrams
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SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
YRTP_BACSU 1.6e-22 154_[1]_55
AP27_MOUSE 6.3e-22 148_[1]_67
NODG_RHIME 1.1e-21 151_[1]_65
BUDC_KLETE 4e-21 151_[1]_61
FIXR_BRAJA 6.1e-21 188_[1]_61
DHGB_BACME 7.5e-20 159_[1]_74
HMTR_LEIMA 3.4e-19 192_[1]_66
YURA_MYXXA 4.8e-19 159_[1]_70
GUTD_ECOLI 4.8e-19 153_[1]_77
2BHD_STREX 1.1e-18 151_[1]_75
HDHA_ECOLI 1.2e-18 158_[1]_68
DHB2_HUMAN 2.2e-18 231_[1]_127
DHMA_FLAS1 5.5e-18 164_[1]_77
HDE_CANTR 9.7e-18 466_[1]_411
FVT1_HUMAN 2.9e-17 185_[1]_118
BDH_HUMAN 8.2e-17 207_[1]_107
RIDH_KLEAE 9.1e-17 159_[1]_61
DHES_HUMAN 1.4e-16 154_[1]_144
BA72_EUBSP 2.5e-16 156_[1]_64
LIGD_PSEPA 1.2e-15 156_[1]_120
DHII_HUMAN 1.6e-15 182_[1]_81
ENTA_ECOLI 1.8e-15 143_[1]_76
3BHD_COMTE 7.8e-15 150_[1]_74
DHB3_HUMAN 8.6e-15 197_[1]_84
RFBB_NEIGO 1.5e-14 164_[1]_153
YINL_LISMO 3.2e-14 153_[1]_66
BPHB_PSEPS 1.8e-12 152_[1]_94
CSGA_MYXXA 2.1e-12 87_[1]_50
FABI_ECOLI 4.2e-12 158_[1]_75
ADH_DROME 5.2e-12 151_[1]_75
DHCA_HUMAN 4.8e-10 192_[1]_55
PCR_PEA 2.8e-08 25_[1]_345
MAS1_AGRRA 5.7e-08 348_[1]_99
--------------------------------------------------------------------------------
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Motif 1 in BLOCKS format
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BL MOTIF 1 width=29 seqs=33
YRTP_BACSU ( 155) YSASKFAVLGLTESLMQEVRKHNIRVSAL 1
AP27_MOUSE ( 149) YSSTKGAMTMLTKAMAMELGPHKIRVNSV 1
NODG_RHIME ( 152) YCASKAGMIGFSKSLAQEIATRNITVNCV 1
BUDC_KLETE ( 152) YSSSKFAVRGLTQTAARDLAPLGITVNGF 1
FIXR_BRAJA ( 189) YATSKAALASLTRELAHDYAPHGIRVNAI 1
DHGB_BACME ( 160) YAASKGGMKLMTETLALEYAPKGIRVNNI 1
HMTR_LEIMA ( 193) YTMAKGALEGLTRSAALELAPLQIRVNGV 1
YURA_MYXXA ( 160) YSASKAFLSTFMESLRVDLRGTGVRVTCI 1
GUTD_ECOLI ( 154) YSAAKFGGVGLTQSLALDLAEYGITVHSL 1
2BHD_STREX ( 152) YGASKWGVRGLSKLAAVELGTDRIRVNSV 1
HDHA_ECOLI ( 159) YASSKAAASHLVRNMAFDLGEKNIRVNGI 1
DHB2_HUMAN ( 232) YGSSKAAVTMFSSVMRLELSKWGIKVASI 1
DHMA_FLAS1 ( 165) YVAAKGGVAMLTRAMAVDLARHGILVNMI 1
HDE_CANTR ( 467) YSSSKAGILGLSKTMAIEGAKNNIKVNIV 1
FVT1_HUMAN ( 186) YSASKFAIRGLAEALQMEVKPYNVYITVA 1
BDH_HUMAN ( 208) YCITKFGVEAFSDCLRYEMYPLGVKVSVV 1
RIDH_KLEAE ( 160) YTASKFAVQAFVHTTRRQVAQYGVRVGAV 1
DHES_HUMAN ( 155) YCASKFALEGLCESLAVLLLPFGVHLSLI 1
BA72_EUBSP ( 157) YPASKASVIGLTHGLGREIIRKNIRVVGV 1
LIGD_PSEPA ( 157) YSAAKAASINLMEGYRQGLEKYGIGVSVC 1
DHII_HUMAN ( 183) YSASKFALDGFFSSIRKEYSVSRVNVSIT 1
ENTA_ECOLI ( 144) YGASKAALKSLALSVGLELAGSGVRCNVV 1
3BHD_COMTE ( 151) YSASKAAVSALTRAAALSCRKQGYAIRVN 1
DHB3_HUMAN ( 198) YSASKAFVCAFSKALQEEYKAKEVIIQVL 1
RFBB_NEIGO ( 165) YSASKAAADHLVRAWQRTYRLPSIVSNCS 1
YINL_LISMO ( 154) YGATKWAVRDLMEVLRMESAQEGTNIRTA 1
BPHB_PSEPS ( 153) YTAAKQAIVGLVRELAFELAPYVRVNGVG 1
CSGA_MYXXA ( 88) YRMSKAALNMAVRSMSTDLRPEGFVTVLL 1
FABI_ECOLI ( 159) MGLAKASLEANVRYMANAMGPEGVRVNAI 1
ADH_DROME ( 152) YSGTKAAVVNFTSSLAKLAPITGVTAYTV 1
DHCA_HUMAN ( 193) YGVTKIGVTVLSRIHARKLSEQRKGDKIL 1
PCR_PEA ( 26) KDSTLFGVSSLSDSLKGDFTSSALRCKEL 1
MAS1_AGRRA ( 349) YINCVAPLRMTELCLPHLYETGSGRIVNI 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.09755 E= 3.6e-165
-716 -497 -698 -691 -172 -730 -304 -562 -80 -507 12 -550 -661 -513 -563 -605 -625 -609 -217 508
-51 240 -90 -249 -334 53 -232 -106 -219 -337 -278 -209 -72 -192 -79 276 81 -153 -332 -306
257 -64 -390 -343 -320 -160 -326 -144 -343 -193 26 -120 -436 -313 -349 86 -117 -123 -309 -358
57 116 -511 -541 -504 -420 -453 -532 -481 -549 -470 -353 -434 -438 -470 325 161 -493 -485 -492
-433 -317 -482 -429 -524 -520 -342 -409 413 -326 -416 -349 -435 -343 -57 -433 -392 -321 -375 -453
205 -259 -559 -505 282 34 -356 -70 -475 -333 -299 -445 -475 -1 -468 -326 -334 -312 255 -226
235 -273 -630 -622 68 154 -557 -603 -636 -616 -544 -517 -44 -518 -595 5 -371 -482 -571 -615
-80 -195 -498 -421 -234 -161 -307 78 -389 146 165 -378 -410 -325 -384 -96 -250 223 -275 -265
-75 107 27 110 -355 -358 -150 45 46 -69 -279 -14 -296 44 145 85 61 -5 -331 -279
33 -283 -54 -168 -321 176 159 -291 -150 -137 223 56 -315 -120 -208 49 -61 -125 -319 -277
-215 -277 -532 -447 217 -558 -360 -167 -423 288 23 -95 -427 -325 -396 -413 -122 -250 -311 -327
-89 117 -466 -101 -26 -476 -318 -198 -376 -255 156 -325 -415 -315 -380 173 259 99 -304 -300
-295 -344 26 181 -386 -383 160 -385 151 -69 -304 -196 -322 112 242 49 -236 -378 -354 -305
56 211 -348 6 -258 -72 -244 -52 -256 -112 -197 -40 -364 -217 -294 224 101 -30 -286 10
-3 -202 -498 -419 -224 -471 54 -37 -388 234 272 -382 -407 -317 -379 -325 -74 -85 143 8
204 -306 -264 -189 -396 -69 -189 -390 -14 -378 3 -217 -51 156 193 -72 -251 -369 -361 -322
-277 -280 -236 -39 57 -152 158 -80 39 79 153 -21 -313 156 145 -204 -60 39 -315 8
-164 -464 216 305 -496 -158 -268 -472 -47 -16 -396 -277 -379 31 -306 -90 -81 -452 -469 -411
-157 123 -496 -418 -13 -163 -303 31 -385 220 113 -376 -406 -318 -379 -98 -251 25 -270 253
149 -311 -209 33 -354 22 -151 -97 45 -149 -278 -172 -46 -92 145 50 -59 -348 -330 5
-142 -318 -208 76 -356 -68 -151 -97 147 -150 -280 -172 276 112 34 -61 60 -140 -332 -280
-268 -317 -47 77 -38 -150 250 -359 121 -18 -279 -15 -46 112 -37 50 13 -352 139 222
-156 -338 -229 -48 -391 239 -183 -396 -30 -386 -318 190 -329 27 74 -6 -247 -151 -356 -313
-372 -253 -410 -399 -123 -293 -366 345 -197 -52 -102 -354 -429 -337 -203 -342 -171 118 -313 -110
-144 -290 -233 -162 -327 -68 73 -84 85 -139 -256 56 -312 -113 285 -203 97 1 -321 8
-146 94 -193 -329 -285 -443 -265 73 -337 -177 -228 -168 -320 -310 -312 -198 -113 308 -344 -389
-142 -319 -207 -138 -356 -68 75 -360 46 -347 -280 302 -296 44 34 113 13 -5 -332 6
6 273 -480 -92 -230 26 -297 77 -371 -32 33 44 -403 -310 -372 80 13 130 -270 -259
-80 123 -491 -416 -13 -162 -302 217 -383 93 -169 -51 -405 -320 -379 -96 -66 178 -270 -260
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 3.6e-165
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.939394
0.090909 0.090909 0.030303 0.000000 0.000000 0.181818 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.393939 0.090909 0.030303 0.000000 0.000000
0.575758 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.060606 0.030303 0.000000 0.000000 0.000000 0.181818 0.030303 0.030303 0.000000 0.000000
0.181818 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.606061 0.181818 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.939394 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000
0.484848 0.000000 0.000000 0.000000 0.272727 0.121212 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000
0.575758 0.000000 0.000000 0.000000 0.060606 0.272727 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000
0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.272727 0.090909 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.424242 0.000000 0.000000
0.060606 0.030303 0.060606 0.121212 0.000000 0.000000 0.000000 0.090909 0.060606 0.060606 0.000000 0.030303 0.000000 0.030303 0.151515 0.121212 0.090909 0.090909 0.000000 0.000000
0.151515 0.000000 0.030303 0.000000 0.000000 0.363636 0.060606 0.000000 0.000000 0.030303 0.151515 0.060606 0.000000 0.000000 0.000000 0.090909 0.030303 0.030303 0.000000 0.000000
0.030303 0.000000 0.000000 0.000000 0.242424 0.000000 0.000000 0.000000 0.000000 0.636364 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000
0.060606 0.030303 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.242424 0.333333 0.181818 0.000000 0.000000
0.000000 0.000000 0.060606 0.212121 0.000000 0.000000 0.060606 0.000000 0.151515 0.060606 0.000000 0.000000 0.000000 0.060606 0.303030 0.090909 0.000000 0.000000 0.000000 0.000000
0.181818 0.060606 0.000000 0.060606 0.000000 0.060606 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.333333 0.121212 0.060606 0.000000 0.030303
0.121212 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.484848 0.212121 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.030303 0.030303
0.515152 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.030303 0.000000 0.030303 0.000000 0.030303 0.090909 0.212121 0.030303 0.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 0.030303 0.060606 0.030303 0.060606 0.030303 0.060606 0.181818 0.090909 0.030303 0.000000 0.090909 0.151515 0.000000 0.030303 0.121212 0.000000 0.030303
0.030303 0.000000 0.242424 0.484848 0.000000 0.030303 0.000000 0.000000 0.030303 0.090909 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.000000 0.000000 0.000000
0.030303 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.060606 0.000000 0.454545 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.090909 0.000000 0.181818
0.363636 0.000000 0.000000 0.060606 0.000000 0.121212 0.000000 0.030303 0.060606 0.030303 0.000000 0.000000 0.030303 0.000000 0.151515 0.090909 0.030303 0.000000 0.000000 0.030303
0.030303 0.000000 0.000000 0.090909 0.000000 0.060606 0.000000 0.030303 0.151515 0.030303 0.000000 0.000000 0.333333 0.060606 0.060606 0.030303 0.090909 0.030303 0.000000 0.000000
0.000000 0.000000 0.030303 0.090909 0.030303 0.030303 0.121212 0.000000 0.121212 0.090909 0.000000 0.030303 0.030303 0.060606 0.030303 0.090909 0.060606 0.000000 0.030303 0.151515
0.030303 0.000000 0.000000 0.030303 0.000000 0.515152 0.000000 0.000000 0.030303 0.000000 0.000000 0.181818 0.000000 0.030303 0.090909 0.060606 0.000000 0.030303 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.030303 0.030303 0.000000 0.484848 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.030303 0.303030 0.000000 0.030303
0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.030303 0.030303 0.090909 0.030303 0.000000 0.060606 0.000000 0.000000 0.424242 0.000000 0.121212 0.090909 0.000000 0.030303
0.030303 0.060606 0.030303 0.000000 0.000000 0.000000 0.000000 0.151515 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.606061 0.000000 0.000000
0.030303 0.000000 0.000000 0.000000 0.000000 0.060606 0.030303 0.000000 0.060606 0.000000 0.000000 0.393939 0.000000 0.030303 0.060606 0.151515 0.060606 0.090909 0.000000 0.030303
0.121212 0.090909 0.000000 0.030303 0.000000 0.121212 0.000000 0.090909 0.000000 0.060606 0.030303 0.060606 0.000000 0.000000 0.000000 0.121212 0.060606 0.212121 0.000000 0.000000
0.060606 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.272727 0.000000 0.181818 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.030303 0.303030 0.000000 0.000000
--------------------------------------------------------------------------------
Time 36.66 secs.
********************************************************************************
********************************************************************************
MOTIF 2 width = 29 sites = 33 llr = 1106 E-value = 2.3e-159
********************************************************************************
--------------------------------------------------------------------------------
Motif 2 Description
--------------------------------------------------------------------------------
Simplified A :14::::531:1:1516:2:322:51111
pos.-specific C :::::::1::::::::1::::::::::::
probability D ::::::::1:::::1:::1:::1::::::
matrix E ::::::::::::::2::11::22::::::
F :::::::::::::1:::::2::::1::1:
G ::::::a4218:9:::::1::1:8:1:11
H :::::::::::::1:::11:1:1::1:::
I ::124::::::5:::2:1::1:::::1:1
K 61:::::::2:::2:::3:::21:13:::
L :::51::::::3:2:2:1151:1:111:3
M :::::::::::::::1::::::1::::::
N :1::::::1:::::::::::::1::1:::
P 1::::::::::::::::::::::::::::
Q 1::::::::1:::::::::::11::::::
R :1:::::::2:::2:::21::111:1:::
S :::::::123::1:1:1:::111:1111:
T 111::9::::1::::2::1::1:::::1:
V :4425::::::1:::12:1:1:::::553
W :::::::::::::::::::::::::::::
Y :::::::::::::::1::::::::1::::
bits 6.7
6.0
5.4
4.7
Information 4.0
content 3.4 **
(48.4 bits) 2.7 *** * *
2.0 * ****** *** * * *
1.3 ****************** * * ** ***
0.7 *****************************
0.0 -----------------------------
Multilevel KVALVTGAASGIGKATAKxLAAEGAKVVL
consensus VII GG L R I F K V
sequence S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------------------
HDE_CANTR 323 2.44e-23 SGAPTVSLKD KVVLITGAGAGLGKEYAKWFAKYGAKVVV NDFKDATKTV
DHII_HUMAN 35 5.50e-23 EEFRPEMLQG KKVIVTGASKGIGREMAYHLAKMGAHVVV TARSKETLQK
YINL_LISMO 6 5.38e-22 MTIKN KVIIITGASSGIGKATALLLAEKGAKLVL AARRVEKLEK
HDHA_ECOLI 12 5.65e-20 FNSDNLRLDG KCAIITGAGAGIGKEIAITFATAGASVVV SDINADAANH
RIDH_KLEAE 15 1.17e-19 VSSMNTSLSG KVAAITGAASGIGLECARTLLGAGAKVVL IDREGEKLNK
BUDC_KLETE 3 1.17e-19 MQ KVALVTGAGQGIGKAIALRLVKDGFAVAI ADYNDATATA
ENTA_ECOLI 6 4.74e-19 MDFSG KNVWVTGAGKGIGYATALAFVEAGAKVTG FDQAFTQEQY
AP27_MOUSE 8 9.31e-19 MKLNFSG LRALVTGAGKGIGRDTVKALHASGAKVVA VTRTNSDLVS
DHMA_FLAS1 15 2.50e-18 VSRRPGRLAG KAAIVTGAAGGIGRATVEAYLREGASVVA MDLAPRLAAT
YRTP_BACSU 7 3.45e-18 MQSLQH KTALITGGGRGIGRATALALAKEGVNIGL IGRTSANVEK
DHGB_BACME 8 5.86e-18 MYKDLEG KVVVITGSSTGLGKSMAIRFATEKAKVVV NYRSKEDEAN
DHB3_HUMAN 49 9.86e-18 LPKSFLRSMG QWAVITGAGDGIGKAYSFELAKRGLNVVL ISRTLEKLEA
PCR_PEA 87 2.47e-17 SSEGKKTLRK GNVVITGASSGLGLATAKALAESGKWHVI MACRDYLKAA
BDH_HUMAN 56 3.01e-17 YASAAEPVGS KAVLVTGCDSGFGFSLAKHLHSKGFLVFA GCLMKDKGHD
BA72_EUBSP 7 3.33e-17 MNLVQD KVTIITGGTRGIGFAAAKIFIDNGAKVSI FGETQEEVDT
FIXR_BRAJA 37 4.06e-17 VNARVDRGEP KVMLLTGASRGIGHATAKLFSEAGWRIIS CARQPFDGER
3BHD_COMTE 7 4.06e-17 TNRLQG KVALVTGGASGVGLEVVKLLLGEGAKVAF SDINEAAGQQ
2BHD_STREX 7 8.05e-17 MNDLSG KTVIITGGARGLGAEAARQAVAAGARVVL ADVLDEEGAA
HMTR_LEIMA 7 1.90e-16 MTAPTV PVALVTGAAKRLGRSIAEGLHAEGYAVCL HYHRSAAEAN
FVT1_HUMAN 33 2.77e-16 ISPKPLALPG AHVVVTGGSSGIGKCIAIECYKQGAFITL VARNEDKLLQ
DHB2_HUMAN 83 3.65e-16 SGQELLPVDQ KAVLVTGGDCGLGHALCKYLDELGFTVFA GVLNENGPGA
LIGD_PSEPA 7 8.31e-16 MKDFQD QVAFITGGASGAGFGQAKVFGQAGAKIVV ADVRAEAVEK
NODG_RHIME 7 4.05e-15 MFELTG RKALVTGASGAIGGAIARVLHAQGAIVGL HGTQIEKLET
DHCA_HUMAN 5 5.24e-15 SSGI HVALVTGGNKGIGLAIVRDLCRLFSGDVV LTARDVTRGQ
MAS1_AGRRA 246 3.00e-14 SHWTVEIHQS PVILVSGSNRGVGKAIAEDLIAHGYRLSL GARKVKDLEV
BPHB_PSEPS 6 8.47e-14 MKLKG EAVLITGGASGLGRALVDRFVAEAKVAVL DKSAERLAEL
GUTD_ECOLI 3 1.46e-13 MN QVAVVIGGGQTLGAFLCHGLAAEGYRVAV VDIQSDKAAN
DHES_HUMAN 3 1.46e-13 AR TVVLITGCSSGIGLHLAVRLASDPSQSFK VYATLRDLKT
RFBB_NEIGO 7 1.59e-12 MQTEGK KNILVTGGAGFIGSAVVRHIIQNTRDSVV NLDKLTYAGN
ADH_DROME 7 6.97e-10 SFTLTN KNVIFVAGLGGIGLDTSKELLKRDLKNLV ILDRIENPAA
FABI_ECOLI 7 3.15e-09 MGFLSG KRILVTGVASKLSIAYGIAQAMHREGAEL AFTYQNDKLK
YURA_MYXXA 117 2.77e-07 RLPWERVRGI IDTNVTGAAATLSAVLPQMVERKRGHLVG VSSLAGFRGL
CSGA_MYXXA 52 4.24e-07 TINALGPLRV TSAMLPGLRQGALRRVAHVTSRMGSLAAN TDGGAYAYRM
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
HDE_CANTR 2.4e-23 322_[2]_555
DHII_HUMAN 5.5e-23 34_[2]_229
YINL_LISMO 5.4e-22 5_[2]_214
HDHA_ECOLI 5.7e-20 11_[2]_215
RIDH_KLEAE 1.2e-19 14_[2]_206
BUDC_KLETE 1.2e-19 2_[2]_210
ENTA_ECOLI 4.7e-19 5_[2]_214
AP27_MOUSE 9.3e-19 7_[2]_208
DHMA_FLAS1 2.5e-18 14_[2]_227
YRTP_BACSU 3.4e-18 6_[2]_203
DHGB_BACME 5.9e-18 7_[2]_226
DHB3_HUMAN 9.9e-18 48_[2]_233
PCR_PEA 2.5e-17 86_[2]_284
BDH_HUMAN 3e-17 55_[2]_259
BA72_EUBSP 3.3e-17 6_[2]_214
FIXR_BRAJA 4.1e-17 36_[2]_213
3BHD_COMTE 4.1e-17 6_[2]_218
2BHD_STREX 8e-17 6_[2]_220
HMTR_LEIMA 1.9e-16 6_[2]_252
FVT1_HUMAN 2.8e-16 32_[2]_271
DHB2_HUMAN 3.7e-16 82_[2]_276
LIGD_PSEPA 8.3e-16 6_[2]_270
NODG_RHIME 4.1e-15 6_[2]_210
DHCA_HUMAN 5.2e-15 4_[2]_243
MAS1_AGRRA 3e-14 245_[2]_202
BPHB_PSEPS 8.5e-14 5_[2]_241
GUTD_ECOLI 1.5e-13 2_[2]_228
DHES_HUMAN 1.5e-13 2_[2]_296
RFBB_NEIGO 1.6e-12 6_[2]_311
ADH_DROME 7e-10 6_[2]_220
FABI_ECOLI 3.1e-09 6_[2]_227
YURA_MYXXA 2.8e-07 116_[2]_113
CSGA_MYXXA 4.2e-07 51_[2]_86
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF 2 width=29 seqs=33
HDE_CANTR ( 323) KVVLITGAGAGLGKEYAKWFAKYGAKVVV 1
DHII_HUMAN ( 35) KKVIVTGASKGIGREMAYHLAKMGAHVVV 1
YINL_LISMO ( 6) KVIIITGASSGIGKATALLLAEKGAKLVL 1
HDHA_ECOLI ( 12) KCAIITGAGAGIGKEIAITFATAGASVVV 1
RIDH_KLEAE ( 15) KVAAITGAASGIGLECARTLLGAGAKVVL 1
BUDC_KLETE ( 3) KVALVTGAGQGIGKAIALRLVKDGFAVAI 1
ENTA_ECOLI ( 6) KNVWVTGAGKGIGYATALAFVEAGAKVTG 1
AP27_MOUSE ( 8) LRALVTGAGKGIGRDTVKALHASGAKVVA 1
DHMA_FLAS1 ( 15) KAAIVTGAAGGIGRATVEAYLREGASVVA 1
YRTP_BACSU ( 7) KTALITGGGRGIGRATALALAKEGVNIGL 1
DHGB_BACME ( 8) KVVVITGSSTGLGKSMAIRFATEKAKVVV 1
DHB3_HUMAN ( 49) QWAVITGAGDGIGKAYSFELAKRGLNVVL 1
PCR_PEA ( 87) GNVVITGASSGLGLATAKALAESGKWHVI 1
BDH_HUMAN ( 56) KAVLVTGCDSGFGFSLAKHLHSKGFLVFA 1
BA72_EUBSP ( 7) KVTIITGGTRGIGFAAAKIFIDNGAKVSI 1
FIXR_BRAJA ( 37) KVMLLTGASRGIGHATAKLFSEAGWRIIS 1
3BHD_COMTE ( 7) KVALVTGGASGVGLEVVKLLLGEGAKVAF 1
2BHD_STREX ( 7) KTVIITGGARGLGAEAARQAVAAGARVVL 1
HMTR_LEIMA ( 7) PVALVTGAAKRLGRSIAEGLHAEGYAVCL 1
FVT1_HUMAN ( 33) AHVVVTGGSSGIGKCIAIECYKQGAFITL 1
DHB2_HUMAN ( 83) KAVLVTGGDCGLGHALCKYLDELGFTVFA 1
LIGD_PSEPA ( 7) QVAFITGGASGAGFGQAKVFGQAGAKIVV 1
NODG_RHIME ( 7) RKALVTGASGAIGGAIARVLHAQGAIVGL 1
DHCA_HUMAN ( 5) HVALVTGGNKGIGLAIVRDLCRLFSGDVV 1
MAS1_AGRRA ( 246) PVILVSGSNRGVGKAIAEDLIAHGYRLSL 1
BPHB_PSEPS ( 6) EAVLITGGASGLGRALVDRFVAEAKVAVL 1
GUTD_ECOLI ( 3) QVAVVIGGGQTLGAFLCHGLAAEGYRVAV 1
DHES_HUMAN ( 3) TVVLITGCSSGIGLHLAVRLASDPSQSFK 1
RFBB_NEIGO ( 7) KNILVTGGAGFIGSAVVRHIIQNTRDSVV 1
ADH_DROME ( 7) KNVIFVAGLGGIGLDTSKELLKRDLKNLV 1
FABI_ECOLI ( 7) KRILVTGVASKLSIAYGIAQAMHREGAEL 1
YURA_MYXXA ( 117) IDTNVTGAAATLSAVLPQMVERKRGHLVG 1
CSGA_MYXXA ( 52) TSAMLPGLRQGALRRVAHVTSRMGSLAAN 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 20 w= 29 n= 9072 bayes= 8.09755 E= 2.3e-159
-143 -322 -212 -29 -360 -150 75 -97 323 -150 -283 -174 41 159 -35 -190 13 -356 -334 -283
0 103 -55 -150 -343 -365 68 -277 37 -328 -270 137 -300 -104 27 -68 8 216 134 -284
184 -328 -685 -628 -415 -668 -559 121 -607 -334 17 -587 -610 -559 -621 -535 7 212 -519 -487
-171 -214 -506 -425 -20 -485 -317 170 -395 240 30 -63 -412 -320 -383 -339 -272 73 137 -278
-548 -378 -767 -727 -25 -789 -710 277 -719 -45 -344 -695 -699 -669 -749 -678 -480 260 -602 -574
-390 -251 -433 -462 -434 -534 -365 -109 -376 -462 -320 -258 -80 -318 -390 -26 386 -153 -406 -454
-198 -345 -337 -398 -504 336 -361 -523 -381 -566 -470 -293 -442 -394 -385 -308 -423 -506 -397 -449
205 225 -616 -594 -556 193 -536 -552 -603 -163 -504 -510 -489 -501 -571 4 -361 -139 -540 -583
131 -370 35 -219 -442 128 -213 -456 -212 -158 -382 70 -370 -181 -55 181 -71 -445 -421 -359
-30 108 -48 -141 -360 23 -153 -364 148 -351 -284 -173 -299 159 146 204 -60 -357 -335 -283
-204 -337 -316 -378 -112 323 -341 -505 -141 -549 -452 -272 -427 -375 -136 -296 -74 -492 -378 -430
-95 -361 -677 -632 -23 -695 -554 323 -604 166 -255 -593 -615 -536 -614 -563 -440 -15 -461 -462
-326 -337 -324 -385 -492 331 -348 -511 -368 -235 -458 -280 -431 -381 -372 -66 -413 -495 -385 -437
-30 -269 -258 -187 114 -153 158 -74 206 82 -239 -214 -326 -135 191 -71 -224 -281 -312 9
237 89 -43 92 -86 -158 5 -315 -262 -325 -263 -289 -394 -232 -114 27 -229 -127 -314 -338
-79 126 -496 -418 -229 -460 -302 183 -384 95 114 -373 -406 -2 -380 -314 194 28 -269 160
260 176 -422 -376 -354 -156 -358 -340 -378 -355 -293 -375 -107 -342 -381 -6 -258 55 -342 -392
-270 -314 -48 76 -39 -361 159 86 236 21 -276 -175 -299 43 146 -189 -211 -138 -330 6
56 -301 25 75 -338 -68 212 -90 -130 -15 8 -180 -302 41 116 -193 13 -2 141 7
-177 105 -501 -421 238 -487 -316 -44 -391 257 -134 -393 -406 -19 -377 -340 -87 -96 -279 -4
151 122 -87 -90 -241 -159 248 70 -331 38 -181 -340 -395 -280 -347 -10 -242 54 -276 11
75 -319 -47 137 -356 -68 -150 -361 189 -347 5 -170 -296 112 117 5 13 -353 -332 -279
55 -318 27 179 -355 -357 159 -360 88 -69 94 59 -295 112 34 6 -209 -352 -331 6
-204 -337 -127 -377 -112 318 -341 -505 -141 -549 -452 -272 -122 -374 -52 -296 -161 -492 -378 -430
225 -109 -325 -105 68 -158 -257 -288 -22 -98 -250 -283 -385 -221 -102 31 -229 -121 98 106
-75 -318 -47 -137 -40 -68 159 -97 236 -69 -279 59 -295 44 117 6 -59 -140 140 -279
-91 -125 -192 -330 -284 -443 -59 58 -338 -101 -228 -167 -320 -310 -312 -132 -175 304 -343 -387
-59 39 -374 -175 10 -177 -269 -2 -342 -164 -220 -355 -327 -311 -318 -112 -56 295 -333 -366
6 -192 -493 -415 -11 -69 -301 78 -81 174 -170 -49 -406 -318 -378 -94 -246 162 -269 -259
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif 2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 20 w= 29 nsites= 33 E= 2.3e-159
0.030303 0.000000 0.000000 0.030303 0.000000 0.030303 0.030303 0.030303 0.575758 0.030303 0.000000 0.000000 0.060606 0.090909 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000
0.121212 0.030303 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.121212 0.000000 0.000000 0.060606 0.030303 0.060606 0.424242 0.030303 0.000000
0.424242 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.121212 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.363636 0.000000 0.000000
0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.212121 0.000000 0.484848 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.151515 0.030303 0.000000
0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.393939 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.515152 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.030303 0.878788 0.030303 0.000000 0.000000
0.030303 0.000000 0.000000 0.000000 0.000000 0.969697 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
0.454545 0.060606 0.000000 0.000000 0.000000 0.363636 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.030303 0.000000 0.000000
0.303030 0.000000 0.060606 0.000000 0.000000 0.242424 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.030303 0.242424 0.030303 0.000000 0.000000 0.000000
0.090909 0.030303 0.030303 0.000000 0.000000 0.121212 0.000000 0.000000 0.151515 0.000000 0.000000 0.000000 0.000000 0.090909 0.151515 0.303030 0.030303 0.000000 0.000000 0.000000
0.030303 0.000000 0.000000 0.000000 0.030303 0.818182 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.000000 0.000000
0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.545455 0.000000 0.303030 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000
0.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.000000 0.000000 0.000000
0.090909 0.000000 0.000000 0.000000 0.090909 0.030303 0.060606 0.030303 0.242424 0.181818 0.000000 0.000000 0.000000 0.000000 0.212121 0.030303 0.000000 0.000000 0.000000 0.030303
0.484848 0.030303 0.060606 0.181818 0.030303 0.030303 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.000000 0.030303 0.000000 0.000000
0.060606 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.212121 0.000000 0.181818 0.060606 0.000000 0.000000 0.030303 0.000000 0.000000 0.242424 0.090909 0.000000 0.090909
0.636364 0.060606 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.060606 0.000000 0.181818 0.000000 0.000000
0.000000 0.000000 0.030303 0.090909 0.030303 0.000000 0.060606 0.121212 0.303030 0.121212 0.000000 0.000000 0.000000 0.030303 0.151515 0.000000 0.000000 0.030303 0.000000 0.030303
0.181818 0.000000 0.060606 0.090909 0.000000 0.060606 0.090909 0.030303 0.000000 0.090909 0.030303 0.000000 0.000000 0.030303 0.121212 0.000000 0.060606 0.090909 0.030303 0.030303
0.030303 0.030303 0.000000 0.000000 0.242424 0.000000 0.000000 0.030303 0.000000 0.545455 0.000000 0.000000 0.000000 0.030303 0.000000 0.000000 0.030303 0.030303 0.000000 0.030303
0.333333 0.030303 0.030303 0.030303 0.000000 0.030303 0.121212 0.090909 0.000000 0.121212 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.000000 0.121212 0.000000 0.030303
0.212121 0.000000 0.030303 0.151515 0.000000 0.060606 0.000000 0.000000 0.212121 0.000000 0.030303 0.000000 0.000000 0.060606 0.121212 0.060606 0.060606 0.000000 0.000000 0.000000
0.181818 0.000000 0.060606 0.212121 0.000000 0.000000 0.060606 0.000000 0.090909 0.060606 0.060606 0.060606 0.000000 0.060606 0.060606 0.060606 0.000000 0.000000 0.000000 0.030303
0.030303 0.000000 0.030303 0.000000 0.030303 0.757576 0.000000 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.060606 0.000000 0.030303 0.000000 0.000000 0.000000
0.454545 0.000000 0.000000 0.030303 0.090909 0.030303 0.000000 0.000000 0.060606 0.060606 0.000000 0.000000 0.000000 0.000000 0.030303 0.090909 0.000000 0.030303 0.030303 0.090909
0.060606 0.000000 0.030303 0.000000 0.030303 0.060606 0.060606 0.030303 0.303030 0.060606 0.000000 0.060606 0.000000 0.030303 0.121212 0.060606 0.030303 0.030303 0.030303 0.000000
0.090909 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.121212 0.000000 0.090909 0.000000 0.030303 0.000000 0.000000 0.000000 0.060606 0.000000 0.545455 0.000000 0.000000
0.121212 0.030303 0.000000 0.030303 0.090909 0.060606 0.000000 0.030303 0.000000 0.030303 0.000000 0.000000 0.000000 0.000000 0.000000 0.060606 0.060606 0.484848 0.000000 0.000000
0.121212 0.000000 0.000000 0.000000 0.030303 0.060606 0.000000 0.090909 0.030303 0.333333 0.000000 0.030303 0.000000 0.000000 0.000000 0.030303 0.000000 0.272727 0.000000 0.000000
--------------------------------------------------------------------------------
Time 67.32 secs.
********************************************************************************
********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************
--------------------------------------------------------------------------------
Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
2BHD_STREX 3.15e-28 6_[2(8.05e-17)]_116_[1(1.11e-18)]_75
3BHD_COMTE 9.69e-25 6_[2(4.06e-17)]_115_[1(7.81e-15)]_74
ADH_DROME 6.95e-15 6_[2(6.97e-10)]_116_[1(5.20e-12)]_75
AP27_MOUSE 2.21e-33 7_[2(9.31e-19)]_112_[1(6.32e-22)]_67
BA72_EUBSP 2.62e-26 6_[2(3.33e-17)]_121_[1(2.52e-16)]_64
BDH_HUMAN 1.58e-26 55_[2(3.01e-17)]_123_[1(8.20e-17)]_107
BPHB_PSEPS 4.38e-19 5_[2(8.47e-14)]_118_[1(1.80e-12)]_94
BUDC_KLETE 1.73e-33 2_[2(1.17e-19)]_120_[1(4.04e-21)]_61
DHES_HUMAN 9.98e-23 2_[2(1.46e-13)]_123_[1(1.37e-16)]_144
DHGB_BACME 1.78e-30 7_[2(5.86e-18)]_123_[1(7.52e-20)]_74
DHII_HUMAN 4.64e-31 34_[2(5.50e-23)]_119_[1(1.61e-15)]_81
DHMA_FLAS1 5.69e-29 14_[2(2.50e-18)]_121_[1(5.53e-18)]_77
ENTA_ECOLI 2.69e-27 5_[2(4.74e-19)]_109_[1(1.77e-15)]_76
FIXR_BRAJA 1.15e-30 36_[2(4.06e-17)]_123_[1(6.12e-21)]_61
GUTD_ECOLI 2.33e-25 2_[2(1.46e-13)]_122_[1(4.82e-19)]_77
HDE_CANTR 1.43e-32 8_[2(3.45e-18)]_125_[1(4.01e-13)]_131_[2(2.44e-23)]_115_[1(9.65e-18)]_411
HDHA_ECOLI 2.75e-31 11_[2(5.65e-20)]_74_[1(4.42e-05)]_15_[1(1.25e-18)]_68
LIGD_PSEPA 4.54e-24 6_[2(8.31e-16)]_121_[1(1.21e-15)]_120
NODG_RHIME 1.55e-29 6_[2(4.05e-15)]_116_[1(1.13e-21)]_65
RIDH_KLEAE 3.67e-29 14_[2(1.17e-19)]_116_[1(9.09e-17)]_61
YINL_LISMO 5.92e-29 5_[2(5.38e-22)]_119_[1(3.24e-14)]_66
YRTP_BACSU 2.01e-33 6_[2(3.45e-18)]_119_[1(1.64e-22)]_55
CSGA_MYXXA 5.53e-13 51_[2(4.24e-07)]_7_[1(2.10e-12)]_50
DHB2_HUMAN 6.87e-27 82_[2(3.65e-16)]_120_[1(2.23e-18)]_127
DHB3_HUMAN 4.11e-25 48_[2(9.86e-18)]_120_[1(8.55e-15)]_84
DHCA_HUMAN 6.86e-18 4_[2(5.24e-15)]_159_[1(4.80e-10)]_55
FABI_ECOLI 2.57e-14 6_[2(3.15e-09)]_123_[1(4.15e-12)]_75
FVT1_HUMAN 4.64e-26 32_[2(2.77e-16)]_124_[1(2.86e-17)]_118
HMTR_LEIMA 2.93e-28 6_[2(1.90e-16)]_157_[1(3.35e-19)]_66
MAS1_AGRRA 1.26e-14 245_[2(3.00e-14)]_74_[1(5.72e-08)]_99
PCR_PEA 4.22e-18 25_[1(2.77e-08)]_32_[2(2.47e-17)]_284
RFBB_NEIGO 1.14e-19 6_[2(1.59e-12)]_129_[1(1.47e-14)]_153
YURA_MYXXA 3.34e-19 116_[2(2.77e-07)]_14_[1(4.82e-19)]_70
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Stopped because nmotifs = 2 reached.
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CPU: pmgm2
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