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#!/usr/bin/env python
# Copyright 2001 by Brad Chapman. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Test for graphics things that don't really deserve there own test module."""
# TODO: Right now this test occasionally fails with a trace like:
# File "/usr/local/lib/python2.1/site-packages/reportlab/graphics/
# charts/", line 182, in calcPositions
# datum =[rowNo][colNo] # x,y value
# IndexError: list index out of range
# This appears to be a problem with reportlab, so I'm not worrying about
# it right now, unless it starts to happen with real data! If anyone
# can figure out the data that causes it so I can avoid it, that'd be much
# appreciated.
# standard library
import os
import random
import unittest
from Bio import MissingExternalDependencyError
# Skip the test if reportlab is not installed
import reportlab as r
del r
except ImportError:
raise MissingExternalDependencyError(
"Install reportlab if you want to use Bio.Graphics.")
# the stuff we're testing
from Bio.Graphics.Comparative import ComparativeScatterPlot
class ComparativeTest(unittest.TestCase):
"""Do tests for modules involved with comparing data.
def setUp(self):
self.min_num_points = 1
self.max_num_points = 500
self.min_point_num = 0
self.max_point_num = 200
def _make_random_points(self, num_two_d_lists):
"""Make a bunch of random points for testing plots.
plot_info = []
for two_d_list in range(num_two_d_lists):
cur_list = []
num_points = random.randrange(self.min_num_points,
for point in range(num_points):
x_point = random.randrange(self.min_point_num,
y_point = random.randrange(self.min_point_num,
cur_list.append((x_point, y_point))
return plot_info
def test_simple_scatter_plot_1(self):
"""Test creation of a simple ScatterPlot with one list."""
compare_plot = ComparativeScatterPlot()
compare_plot.display_info = self._make_random_points(1)
output_file = os.path.join(os.getcwd(), "Graphics", "scatter_test_1.pdf")
compare_plot.draw_to_file(output_file, "Testing Scatter Plots")
def test_simple_scatter_plot_7(self):
"""Test creation of a simple ScatterPlot with more lists."""
compare_plot = ComparativeScatterPlot()
# There are 6 pre-defined colors and symbols, doing more:
compare_plot.display_info = self._make_random_points(7)
output_file = os.path.join(os.getcwd(), "Graphics", "scatter_test_7.pdf")
compare_plot.draw_to_file(output_file, "Testing Scatter Plots")
if __name__ == "__main__":
runner = unittest.TextTestRunner(verbosity=2)