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# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.

"""Tests for SearchIO fasta-m10 indexing."""

import os
import unittest

from search_tests_common import CheckIndex


class FastaM10IndexCases(CheckIndex):

    fmt = 'fasta-m10'

    def test_output_002(self):
        """Test fasta-m10 indexing, fasta34, multiple queries"""
        filename = os.path.join('Fasta', 'output002.m10')
        self.check_index(filename, self.fmt)

    def test_output_001(self):
        """Test fasta-m10 indexing, fasta35, multiple queries"""
        filename = os.path.join('Fasta', 'output001.m10')
        self.check_index(filename, self.fmt)

    def test_output_005(self):
        """Test fasta-m10 indexing, ssearch35, multiple queries"""
        filename = os.path.join('Fasta', 'output005.m10')
        self.check_index(filename, self.fmt)

    def test_output_008(self):
        """Test fasta-m10 indexing, tfastx36, multiple queries"""
        filename = os.path.join('Fasta', 'output008.m10')
        self.check_index(filename, self.fmt)

    def test_output_009(self):
        """Test fasta-m10 indexing, fasta36, multiple queries"""
        filename = os.path.join('Fasta', 'output009.m10')
        self.check_index(filename, self.fmt)

    def test_output_010(self):
        """Test fasta-m10 indexing, fasta36, single query, no hits"""
        filename = os.path.join('Fasta', 'output010.m10')
        self.check_index(filename, self.fmt)

    def test_output_011(self):
        """Test fasta-m10 indexing, fasta36, single query, hits with single hsp"""
        filename = os.path.join('Fasta', 'output011.m10')
        self.check_index(filename, self.fmt)

    def test_output_012(self):
        """Test fasta-m10 indexing, fasta36, single query with multiple hsps"""
        filename = os.path.join('Fasta', 'output012.m10')
        self.check_index(filename, self.fmt)


if __name__ == "__main__":
    runner = unittest.TextTestRunner(verbosity = 2)
    unittest.main(testRunner=runner)
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