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1 parent 427c2a0 commit 1a0e613af7daa35b03594beb531d720ab8115d01 katel committed
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  1. +56 −0 Tests/Saf/saf1.txt
  2. +55 −0 Tests/output/test_saf
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56 Tests/Saf/saf1.txt
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+BOVINE ...................................MSELDQLRQEAEQLKNQIRDARKAC
+HUMAN ...................................MSELDQLRQEAEQLKNQIRDARKAC
+FILONEOFORMANS ....MQD...........................IQDKIAAARREADGLKDKLRAARDQT
+MOUSE MATDGLH...........................ENETLASLKSEAESLKGKLEEERAKL
+YEAST MAAHQMDSITYSNNVTQQYIQPQSLQDISAVEDEIQNKIEAARQESKQLHAQINKAKHKI
+ORENI .MTEQMT...........................VRGTLKGHSGWVTQIATTPKYPDMIL
+#
+BOVINE ADATLSQITNNIDPVGR..IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
+HUMAN ADATLSQITNNIDPVGR..IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
+FILONEOFORMANS ADTSLRAMATDTPPLPR..ITLKARRTLKGHLAKIYALHWAADTRHIVSASQDGKLIVWD
+MOUSE HDVELHQVAERVEALGQ..FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD
+YEAST QDASLFQMANKVTSLTKNKINLKPNIVLKGHNNKISDFRWSRDSKRILSASQDGFMLIWD
+ORENI SASRDKSIIMWKLTRDET.NYGIPQRSLKGHSHFVSDVVISSDG.FALSGAWDGTLRLWD
+#
+BOVINE SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR........EGNVRV
+HUMAN SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR........EGNVRV
+FILONEOFORMANS AYTTNKVHAIPLRSSWVMTAAYAPSGNLVACGGLDNVCSIYSLRGAGPGAPGAPGGQVKV
+MOUSE SFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD......KNENMAAK
+YEAST SASGLKQNAIPLDSQWVLSCAISPSSTLVASAGLNNNCTIYRVSKE.......NRVAQNV
+ORENI LTTGLTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNT...........LGVCKY
+#
+BOVINE SRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
+HUMAN SRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
+FILONEOFORMANS ARELSAHSGYLSCCRFIN.DRQIVTSSG.DMTCMLWDIEQGTRTMEFNDHTGDVMCISLA
+MOUSE KKSVAMHTNYLSACSFTNSDMQILTASG.DGTCALWDVESGQLLQSFHGHGADVLCLDLA
+YEAST ASIFKGHTCYISDIEFTD.NAHILTASG.DMTCALWDIPKAKRVREYSDHLGDVLALAIP
+ORENI TIQDEGHTEWVSCVRFSNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVS
+#
+BOVINE ..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD
+HUMAN ..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD
+FILONEOFORMANS ..P....NANLFVSGACDATAKVWDIRTGKAVQTFTGHESDINAVQFFPNGDAFATGSDD
+MOUSE ..PSE..TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD
+YEAST EEPNSENSSNTFASCGSDGYTYIWDSRSPSAVQSFYVNDSDINALRFFKDGMSIVAGSDN
+ORENI ..P....DGSLCASGGKDGQAMLWDLNEGKHLYTLDSGD.VINALCFSPNRYWLCAATG.
+#
+BOVINE ATCRLFDLRADQELMTYS.....HD..........NIIC....................G
+HUMAN ATCRLFDLRADQELMTYS.....HD..........NIIC....................G
+FILONEOFORMANS ASCKLFDLRADRELNSYA.....HD..........NILC....................G
+MOUSE ATCRLYDLRADREVAIYS.....KE..........SIIF....................G
+YEAST GAINMYDLRSDCSIATFSLFRGYEERTPTPTYMAANMEYNTAQSPQTLKSTSSSYLDNQG
+ORENI PSIKIWDLEGKIIVDELR.....QEVIS......TNSKAEP.................PQ
+#
+BOVINE ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDG.MAVATGSW
+HUMAN ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW
+FILONEOFORMANS ITSVAFSISGRVLFAGYDDYNCNVWDTLKGERIGVLAGHENRVSCMGVSGDGVALCTGSW
+MOUSE ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW
+YEAST VVSLDFSASGRLMYSCYTDIGCVVWDVLKGEIVGKLEGHGGRVTGVRSSPDGLAVCTGSW
+ORENI CTSLAWSADGQTLFAGYTDN.LIVWQVTIGTR............................
+#
+BOVINE DSFLKIWN....
+HUMAN DSFLKIWN....
+FILONEOFORMANS DSLLKVWS....
+MOUSE DHTLRVWA....
+YEAST DSTMKIWSPGYQ
+ORENI ............
+#
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55 Tests/output/test_saf
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+test_saf
+Testing Bio.Saf on saf1.txt
+
+
+BOVINE
+...................................MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGR..I
+QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI
+YNLKTR........EGNVRVSRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
+..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS..
+...HD..........NIIC....................GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD
+NRVSCLGVTDG.MAVATGSWDSFLKIWN....
+
+HUMAN
+...................................MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGR..I
+QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI
+YNLKTR........EGNVRVSRELAGHTGYLSCCRFLD.DNQIVTSSG.DTTCALWDIETGQQTTTFTGHTGDVMSLSLA
+..P....DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS..
+...HD..........NIIC....................GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD
+NRVSCLGVTDDGMAVATGSWDSFLKIWN....
+
+FILONEOFORMANS
+....MQD...........................IQDKIAAARREADGLKDKLRAARDQTADTSLRAMATDTPPLPR..I
+TLKARRTLKGHLAKIYALHWAADTRHIVSASQDGKLIVWDAYTTNKVHAIPLRSSWVMTAAYAPSGNLVACGGLDNVCSI
+YSLRGAGPGAPGAPGGQVKVARELSAHSGYLSCCRFIN.DRQIVTSSG.DMTCMLWDIEQGTRTMEFNDHTGDVMCISLA
+..P....NANLFVSGACDATAKVWDIRTGKAVQTFTGHESDINAVQFFPNGDAFATGSDDASCKLFDLRADRELNSYA..
+...HD..........NILC....................GITSVAFSISGRVLFAGYDDYNCNVWDTLKGERIGVLAGHE
+NRVSCMGVSGDGVALCTGSWDSLLKVWS....
+
+MOUSE
+MATDGLH...........................ENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQ..F
+VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV
+YPLTFD......KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG.DGTCALWDVESGQLLQSFHGHGADVLCLDLA
+..PSE..TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS..
+...KE..........SIIF....................GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE
+NRVSTLRVSPDGTAFCSGSWDHTLRVWA....
+
+YEAST
+MAAHQMDSITYSNNVTQQYIQPQSLQDISAVEDEIQNKIEAARQESKQLHAQINKAKHKIQDASLFQMANKVTSLTKNKI
+NLKPNIVLKGHNNKISDFRWSRDSKRILSASQDGFMLIWDSASGLKQNAIPLDSQWVLSCAISPSSTLVASAGLNNNCTI
+YRVSKE.......NRVAQNVASIFKGHTCYISDIEFTD.NAHILTASG.DMTCALWDIPKAKRVREYSDHLGDVLALAIP
+EEPNSENSSNTFASCGSDGYTYIWDSRSPSAVQSFYVNDSDINALRFFKDGMSIVAGSDNGAINMYDLRSDCSIATFSLF
+RGYEERTPTPTYMAANMEYNTAQSPQTLKSTSSSYLDNQGVVSLDFSASGRLMYSCYTDIGCVVWDVLKGEIVGKLEGHG
+GRVTGVRSSPDGLAVCTGSWDSTMKIWSPGYQ
+
+ORENI
+.MTEQMT...........................VRGTLKGHSGWVTQIATTPKYPDMILSASRDKSIIMWKLTRDET.N
+YGIPQRSLKGHSHFVSDVVISSDG.FALSGAWDGTLRLWDLTTGLTTRRFVGHTKDVLSVAFSADNRQIVSGSRDKTIKL
+WNT...........LGVCKYTIQDEGHTEWVSCVRFSNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHTGYLNTVTVS
+..P....DGSLCASGGKDGQAMLWDLNEGKHLYTLDSGD.VINALCFSPNRYWLCAATG.PSIKIWDLEGKIIVDELR..
+...QEVIS......TNSKAEP.................PQCTSLAWSADGQTLFAGYTDN.LIVWQVTIGTR........
+................................
+
+
+
+

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