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Fix minor typo that has been copied+pasted prevalently.

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1 parent 64e0def commit 3fc96d36dce4c347ea0a68bc56f9fb26c65800eb @cbrueffer cbrueffer committed with peterjc Nov 4, 2012
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4 Bio/Align/__init__.py
@@ -620,15 +620,15 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..", "..", "Tests", "Clustalw")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..", "..", "Tests"))
doctest.testmod()
os.chdir(cur_dir)
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests", "Clustalw")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
2 Bio/AlignIO/StockholmIO.py
@@ -541,7 +541,7 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..","..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","..","Tests"))
assert os.path.isfile("Stockholm/simple.sth")
View
4 Bio/AlignIO/__init__.py
@@ -465,15 +465,15 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..", "..", "Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..", "..", "Tests"))
doctest.testmod()
os.chdir(cur_dir)
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests", "Fasta")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
2 Bio/Entrez/__init__.py
@@ -448,7 +448,7 @@ def _open(cgi, params={}, post=False):
def _test():
"""Run the module's doctests (PRIVATE)."""
- print "Runing doctests..."
+ print "Running doctests..."
import doctest
doctest.testmod()
print "Done"
View
4 Bio/GenBank/__init__.py
@@ -1477,15 +1477,15 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..","..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","..","Tests"))
doctest.testmod()
os.chdir(cur_dir)
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
2 Bio/KEGG/Compound/__init__.py
@@ -199,7 +199,7 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..","..","..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","..","..","Tests"))
doctest.testmod()
View
2 Bio/KEGG/Enzyme/__init__.py
@@ -298,7 +298,7 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..","..","..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","..","..","Tests"))
doctest.testmod()
View
2 Bio/Motif/__init__.py
@@ -143,7 +143,7 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..","..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","..","Tests"))
doctest.testmod()
View
2 Bio/PDB/Selection.py
@@ -79,7 +79,7 @@ def unfold_entities(entity_list, target_level):
def _test():
"""Run the Bio.PDB.Selection module's doctests (PRIVATE)."""
import doctest
- print "Runing doctests ..."
+ print "Running doctests ..."
doctest.testmod()
print "Done"
View
2 Bio/Seq.py
@@ -2127,7 +2127,7 @@ def _test():
print "Not running Bio.Seq doctest on Python 3.1"
print "See http://bugs.python.org/issue7490"
else:
- print "Runing doctests..."
+ print "Running doctests..."
import doctest
doctest.testmod(optionflags=doctest.IGNORE_EXCEPTION_DETAIL)
print "Done"
View
4 Bio/SeqFeature.py
@@ -1400,15 +1400,15 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","Tests"))
doctest.testmod()
os.chdir(cur_dir)
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests")) :
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
4 Bio/SeqIO/AceIO.py
@@ -119,7 +119,7 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..", "..", "Tests", "Ace")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..", "..", "Tests"))
assert os.path.isfile("Ace/consed_sample.ace")
@@ -128,7 +128,7 @@ def _test():
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests", "Ace")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
2 Bio/SeqIO/PhdIO.py
@@ -156,7 +156,7 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..", "..", "Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..", "..", "Tests"))
assert os.path.isfile("Phd/phd1")
View
2 Bio/SeqIO/QualityIO.py
@@ -1817,7 +1817,7 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..", "..", "Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..", "..", "Tests"))
assert os.path.isfile("Quality/example.fastq")
View
4 Bio/SeqIO/__init__.py
@@ -932,15 +932,15 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..", "..", "Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..", "..", "Tests"))
doctest.testmod()
os.chdir(cur_dir)
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests", "Fasta")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
4 Bio/SeqRecord.py
@@ -1132,15 +1132,15 @@ def _test():
import doctest
import os
if os.path.isdir(os.path.join("..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","Tests"))
doctest.testmod()
os.chdir(cur_dir)
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
2 Bio/SeqUtils/MeltingTemp.py
@@ -176,7 +176,7 @@ def overcount(st,p):
def _test():
"""Run the module's doctests (PRIVATE)."""
import doctest
- print "Runing doctests..."
+ print "Running doctests..."
doctest.testmod()
print "Done"
View
4 Bio/SeqUtils/__init__.py
@@ -361,15 +361,15 @@ def _test():
import os
import doctest
if os.path.isdir(os.path.join("..","Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("..","Tests"))
doctest.testmod()
os.chdir(cur_dir)
del cur_dir
print "Done"
elif os.path.isdir(os.path.join("Tests")):
- print "Runing doctests..."
+ print "Running doctests..."
cur_dir = os.path.abspath(os.curdir)
os.chdir(os.path.join("Tests"))
doctest.testmod()
View
2 Bio/Sequencing/Applications/_Novoalign.py
@@ -174,7 +174,7 @@ def __init__(self, cmd="novoalign", **kwargs):
def _test():
"""Run the module's doctests (PRIVATE)."""
- print "Runing Novoalign doctests..."
+ print "Running Novoalign doctests..."
import doctest
doctest.testmod()
print "Done"
View
2 Bio/pairwise2.py
@@ -855,7 +855,7 @@ def format_alignment(align1, align2, score, begin, end):
def _test():
"""Run the module's doctests (PRIVATE)."""
- print "Runing doctests..."
+ print "Running doctests..."
import doctest
doctest.testmod(optionflags=doctest.IGNORE_EXCEPTION_DETAIL)
print "Done"
View
2 Tests/output/test_GFF2
@@ -1,6 +1,6 @@
test_GFF2
Running Bio.GFF.GenericTools doctests...
-Runing doctests...
+Running doctests...
Done
Bio.GFF.GenericTools doctests complete.
Running Bio.GFF.easy doctests...
View
2 Tests/test_Tutorial.py
@@ -127,7 +127,7 @@ def tearDown(self):
#This is to run the doctests if the script is called directly:
if __name__ == "__main__":
- print "Runing Tutorial doctests..."
+ print "Running Tutorial doctests..."
import doctest
tests = doctest.testmod()
if tests[0]:

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