Permalink
Browse files

Bringing these up to date with changes since Biopython 1.44

  • Loading branch information...
1 parent ba9780a commit 4556db2aa7fe332ae22405c3e29df2bf0aadeeb1 @peterjc peterjc committed Dec 14, 2007
Showing with 18 additions and 1 deletion.
  1. +6 −0 DEPRECATED
  2. +12 −1 NEWS
View
@@ -2,6 +2,12 @@ This file provides documentation for modules in Biopython that have been moved
or deprecated in favor of other modules. This provides some quick and easy
to find documentation about how to update your code to work again.
+Bio.WWW
+=======
+The modules under Bio.WWW are being deprecated as of Release 1.45
+The functionality in Bio.WWW.SCOP, Bio.WWW.InterPro and Bio.WWW.ExPASy
+is now available from Bio.SCOP, Bio.InterPro and Bio.ExPASy instead.
+
Bio.Blast.NCBIWWW
=================
The deprecated functions blast and blasturl were removed in Release 1.44
View
13 NEWS
@@ -14,7 +14,18 @@ tostring() method is preserved for backwards compatibility.
BioSQL has had some bugs fixed, and has an additional unit test which loads
records into a database using Bio.SeqIO and then checks the records can be
-retieved correctly.
+retieved correctly. The DBSeq and DBSeqRecord classes now subclass the
+Seq and SeqRecord classes, which provides more functionality.
+
+The modules under Bio.WWW are being deprecated.
+Functionality in Bio.WWW.SCOP, Bio.WWW.InterPro and Bio.WWW.ExPASy is now
+available from Bio.SCOP, Bio.InterPro and Bio.ExPASy instead.
+
+Tiago Antao has included more functionality in the Population Genetics
+module, Bio.PopGen
+
+The tutorial has been updated, including devoting a whole chapter to
+Swiss-Prot, Prosite, Prodoc, and ExPASy.
===================================================================

0 comments on commit 4556db2

Please sign in to comment.