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Update tests for extended phylip format

* Update expected output for test_AlignIO, test_SeqIO
* Apply most of the same exceptions affecting the phylip format to
  extended phylip
* Add a sample extended phylip format-file (primates.phyx, from the
  Bodega Phylogenetics Wiki:
  http://bodegaphylo.wikispot.org/RAxML_Tutorial)
  • Loading branch information...
1 parent f4d2001 commit 4d5e57aa197bc4a566c5c64163b88a16c35838d5 Connor McCoy committed with peterjc Jun 8, 2011
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+ 12 898
+Tarsius_syrichta AAGTTTCATT GGAGCCACCA CTCTTATAAT TGCCCATGGC CTCACCTCCT
+Lemur_catta AAGCTTCATA GGAGCAACCA TTCTAATAAT CGCACATGGC CTTACATCAT
+Homo_sapiens AAGCTTCACC GGCGCAGTCA TTCTCATAAT CGCCCACGGG CTTACATCCT
+Pan AAGCTTCACC GGCGCAATTA TCCTCATAAT CGCCCACGGA CTTACATCCT
+Gorilla AAGCTTCACC GGCGCAGTTG TTCTTATAAT TGCCCACGGA CTTACATCAT
+Pongo AAGCTTCACC GGCGCAACCA CCCTCATGAT TGCCCATGGA CTCACATCCT
+Hylobates AAGCTTTACA GGTGCAACCG TCCTCATAAT CGCCCACGGA CTAACCTCTT
+Macaca_fuscus AAGCTTTTCC GGCGCAACCA TCCTTATGAT CGCTCACGGA CTCACCTCTT
+Macaca_mulatta AAGCTTTTCT GGCGCAACCA TCCTCATGAT TGCTCACGGA CTCACCTCTT
+Macaca_fascicularis AAGCTTCTCC GGCGCAACCA CCCTTATAAT CGCCCACGGG CTCACCTCTT
+Macaca_sylvanus AAGCTTCTCC GGTGCAACTA TCCTTATAGT TGCCCATGGA CTCACCTCTT
+Saimiri_sciureus AAGCTTCACC GGCGCAATGA TCCTAATAAT CGCTCACGGG TTTACTTCGT
+
+ CCCTATTATT TTGCCTAGCA AATACAAACT ACGAACGAGT CCACAGTCGA
+ CCATATTATT CTGTCTAGCC AACTCTAACT ACGAACGAAT CCATAGCCGT
+ CATTACTATT CTGCCTAGCA AACTCAAACT ACGAACGCAC TCACAGTCGC
+ CATTATTATT CTGCCTAGCA AACTCAAATT ATGAACGCAC CCACAGTCGC
+ CATTATTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC
+ CCCTACTGTT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC
+ CCCTGCTATT CTGCCTTGCA AACTCAAACT ACGAACGAAC TCACAGCCGC
+ CCATATATTT CTGCCTAGCC AATTCAAACT ATGAACGCAC TCACAACCGT
+ CCATATATTT CTGCCTAGCC AATTCAAACT ATGAACGCAC TCACAACCGT
+ CCATGTATTT CTGCTTGGCC AATTCAAACT ATGAGCGCAC TCATAACCGT
+ CCATATACTT CTGCTTGGCC AACTCAAACT ACGAACGCAC CCACAGCCGC
+ CTATGCTATT CTGCCTAGCA AACTCAAATT ACGAACGAAT TCACAGCCGA
+
+ ACAATAGCAC TAGCCCGTGG CCTTCAAACC CTATTACCTC TTGCAGCAAC
+ ACAATACTAC TAGCACGAGG GATCCAAACC ATTCTCCCTC TTATAGCCAC
+ ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCTTT
+ ATCATAATTC TCTCCCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT
+ ATCATAATTC TCTCTCAAGG ACTCCAAACC CTACTCCCAC TAATAGCCCT
+ ATCATAATCC TCTCTCAAGG CCTTCAAACT CTACTCCCCC TAATAGCCCT
+ ATCATAATCC TATCTCGAGG GCTCCAAGCC TTACTCCCAC TGATAGCCTT
+ ACCATACTAC TGTCCCGAGG ACTTCAAATC CTACTTCCAC TAACAGCCTT
+ ACCATACTAC TGTCCCGGGG ACTTCAAATC CTACTTCCAC TAACAGCTTT
+ ACCATACTAC TATCCCGAGG ACTTCAAATT CTACTTCCAT TGACAGCCTT
+ ATCATACTAC TATCCCGAGG ACTCCAAATC CTACTCCCAC TAACAGCCTT
+ ACAATAACAT TTACTCGAGG GCTCCAAACA CTATTCCCGC TTATAGGCCT
+
+ ATGATGACTC CTCGCCAGCT TAACCAACCT GGCCCTTCCC CCAACAATTA
+ CTGATGACTA CTCGCCAGCC TAACTAACCT AGCCCTACCC ACCTCTATCA
+ TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACTATTA
+ TTGATGACTC CTAGCAAGCC TCGCTAACCT CGCCCTACCC CCTACCATTA
+ TTGATGACTT CTGGCAAGCC TCGCCAACCT CGCCTTACCC CCCACCATTA
+ CTGATGACTT CTAGCAAGCC TCACTAACCT TGCCCTACCA CCCACCATCA
+ CTGATGACTC GCAGCAAGCC TCGCTAACCT CGCCCTACCC CCCACTATTA
+ TTGATGATTA ACAGCAAGCC TTACTAACCT TGCCCTACCC CCCACTATCA
+ CTGATGATTA ACAGCAAGCC TTACTAACCT TGCCCTACCC CCCACTATCA
+ CTGATGACTC ACAGCAAGCC TTACTAACCT TGCCCTACCC CCCACTATTA
+ CTGATGATTC ACAGCAAGCC TTACTAATCT TGCTCTACCC TCCACTATTA
+ CTGATGACTC CTAGCAAATC TCGCTAACCT CGCCCTACCC ACAGCTATTA
+
+ ATTTAATCGG TGAACTGTCC GTAATAATAG CAGCATTTTC ATGGTCACAC
+ ATTTAATTGG CGAACTATTC GTCACTATAG CATCCTTCTC ATGATCAAAC
+ ACCTACTGGG AGAACTCTCT GTGCTAGTAA CCACGTTCTC CTGATCAAAT
+ ATCTCCTAGG GGAACTCTCC GTGCTAGTAA CCTCATTCTC CTGATCAAAT
+ ACCTACTAGG AGAGCTCTCC GTACTAGTAA CCACATTCTC CTGATCAAAC
+ ACCTTCTAGG AGAACTCTCC GTACTAATAG CCATATTCTC TTGATCTAAC
+ ACCTCCTAGG TGAACTCTTC GTACTAATGG CCTCCTTCTC CTGGGCAAAC
+ ATCTACTAGG TGAACTCTTT GTAATCGCAA CCTCATTCTC CTGATCCCAT
+ ACCTACTAGG TGAACTCTTT GTAATCGCGA CCTCATTCTC CTGGTCCCAT
+ ATCTACTAGG CGAACTCTTT GTAATCACAA CTTCATTTTC CTGATCCCAT
+ ATCTACTGGG CGAACTCTTC GTAATCGCAA CCTCATTTTC CTGATCCCAC
+ ATCTAGTAGG AGAATTACTC ACAATCGTAT CTTCCTTCTC TTGATCCAAC
+
+ CTAACTATTA TCTTAGTAGG CCTTAACACC CTTATCACCG CCCTATATTC
+ ATTACAATTA TCTTAATAGG CTTAAATATG CTCATCACCG CTCTCTATTC
+ ATCACTCTCC TACTTACAGG ACTCAACATA CTAGTCACAG CCCTATACTC
+ ACCACTCTCC TACTCACAGG ATTCAACATA CTAATCACAG CCCTGTACTC
+ ACCACCCTTT TACTTACAGG ATCTAACATA CTAATTACAG CCCTGTACTC
+ ATCACCATCC TACTAACAGG ACTCAACATA CTAATCACAA CCCTATACTC
+ ACTACTATTA CACTCACCGG GCTCAACGTA CTAATCACGG CCCTATACTC
+ ATCACCATTA TGCTAACAGG ACTTAACATA TTAATTACGG CCCTCTACTC
+ ATCACCATTA TATTAACAGG ATTTAACATA CTAATTACGG CCCTCTACTC
+ ATCACCATTG TGTTAACGGG CCTTAATATA CTAATCACAG CCCTCTACTC
+ ATCACCATCA TACTAACAGG ACTGAACATA CTAATTACAG CCCTCTACTC
+ TTTACTATTA TATTCACAGG ACTTAATATA CTAATTACAG CACTCTACTC
+
+ CCTATATATA CTAATCATAA CTCAACGAGG AAAATACACA TATCATATCA
+ CCTCTATATA TTAACTACTA CACAACGAGG AAAACTCACA TATCATTCGC
+ CCTCTACATA TTTACCACAA CACAATGGGG CTCACTCACC CACCACATTA
+ CCTCTACATG TTTACCACAA CACAATGAGG CTCACTCACC CACCACATTA
+ CCTTTATATA TTTACCACAA CACAATGAGG CCCACTCACA CACCACATCA
+ TCTCTATATA TTCACCACAA CACAACGAGG TACACCCACA CACCACATCA
+ CCTTTACATA TTTATCATAA CACAACGAGG CACACTTACA CACCACATTA
+ TCTCCACATA TTCACTACAA CACAACGAGG AACACTCACA CATCACATAA
+ CCTCCACATA TTCACCACAA CACAACGAGG AGCACTCACA CATCACATAA
+ TCTCCACATG TTCATTACAG TACAACGAGG AACACTCACA CACCACATAA
+ TCTTCACATA TTCACCACAA CACAACGAGG AGCGCTCACA CACCACATAA
+ ACTTCATATG TATGCCTCTA CACAGCGAGG TCCACTTACA TACAGCACCA
+
+ ACAATATCAT GCCCCCTTTC ACCCGAGAAA ATACATTAAT AATCATACAC
+ ACAACCTAAA CCCATCCTTT ACACGAGAAA ACACCCTTAT ATCCATACAC
+ ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT GTTCATACAC
+ ATAACATAAA GCCCTCATTC ACACGAGAAA ATACTCTCAT ATTTTTACAC
+ CCAACATAAA ACCCTCATTT ACACGAGAAA ACATCCTCAT ATTCATGCAC
+ ACAACATAAA ACCTTCTTTC ACACGCGAAA ATACCCTCAT GCTCATACAC
+ AAAACATAAA ACCCTCACTC ACACGAGAAA ACATATTAAT ACTTATGCAC
+ TCAACATAAA GCCCCCCTTC ACACGAGAAA ACACATTAAT ATTCATACAC
+ TCAACATAAA ACCCCCCTTC ACACGAGAAA ACATATTAAT ATTCATACAC
+ TCAATATAAA ACCCCCCTTC ACACGAGAAA ACATATTAAT ATTCATACAC
+ TTAACATAAA ACCACCTTTC ACACGAGAAA ACATATTAAT ACTCATACAC
+ GCAATATAAA ACCAATATTT ACACGAGAAA ATACGCTAAT ATTTATACAT
+
+ CTATTTCCCT TAATCCTACT ATCTACCAAC CCCAAAGTAA TTATAGGAAC
+ ATACTCCCCC TTCTCCTATT TACCTTAAAC CCCAAAATTA TTCTAGGACC
+ CTATCCCCCA TTCTCCTCCT ATCCCTCAAC CCCGACATCA TTACCGGGTT
+ CTATCCCCCA TCCTCCTTCT ATCCCTCAAT CCTGATATCA TCACTGGATT
+ CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGATATTA TCACCGGGTT
+ CTATCCCCCA TCCTCCTCTT ATCCCTCAAC CCCAGCATCA TCGCTGGGTT
+ CTCTTCCCCC TCCTCCTCCT AACCCTCAAC CCTAACATCA TTACTGGCTT
+ CTCGCTCCAA TTATCCTTCT ATCCCTCAAC CCCAACATCA TCCTGGGGTT
+ CTCGCTCCAA TCATCCTCCT ATCTCTCAAC CCCAACATCA TCCTGGGGTT
+ CTCGCTCCAA TTATCCTTCT ATCTCTCAAC CCCAACATCA TCCTGGGGTT
+ CTCGCTCCAA TTATTCTTCT ATCTCTTAAC CCCAACATCA TTCTAGGATT
+ ATAACACCAA TCCTCCTCCT TACCTTGAGC CCCAAGGTAA TTATAGGACC
+
+ CATGTACTGT AAATATAGTT TAAACAAAAC ATTAGATTGT GAGTCTAATA
+ CACGTACTGT AAATATAGTT TAAA-AAAAC ACTAGATTGT GAATCCAGAA
+ TTCCTCTTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA
+ CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA
+ CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGATA
+ CGCCTACTGT AAATATAGTT TAACCAAAAC ATTAGATTGT GAATCTAATA
+ TACTCCCTGT AAACATAGTT TAATCAAAAC ATTAGATTGT GAATCTAACA
+ TACCTCCTGT AGATATAGTT TAACTAAAAC ACTAGATTGT GAATCTAACC
+ TACTTCCTGT AGATATAGTT TAACTAAAAC ATTAGATTGT GAATCTAACC
+ TACCTCCTGT AAATATAGTT TAACTAAAAC ATTAGATTGT GAATCTAACT
+ TACTTCCTGT AAATATAGTT TAATTAAAAC ATTAGACTGT GAATCTAACT
+ CTCACCTTGT AATTATAGTT TAGCTAAAAC ATTAGATTGT GAATCTAATA
+
+ ATAGAAGCCC AAAGATTTCT TATTTACCAA GAAAGTA-TG CAAGAACTGC
+ ATAGAAGCTC AAAC-CTTCT TATTTACCGA GAAAGTAATG TATGAACTGC
+ ACAGAGGCTT A-CGACCCCT TATTTACCGA GAAAGCT-CA CAAGAACTGC
+ ACAGAGGCTC A-CGACCCCT TATTTACCGA GAAAGCT-TA TAAGAACTGC
+ ACAGAGGCTC A-CAACCCCT TATTTACCGA GAAAGCT-CG TAAGAGCTGC
+ ATAGGGCCCC A-CAACCCCT TATTTACCGA GAAAGCT-CA CAAGAACTGC
+ ATAGAGGCTC G-AAACCTCT TGCTTACCGA GAAAGCC-CA CAAGAACTGC
+ ATAGAGACTC A-CCACCTCT TATTTACCGA GAAAACT-CG CAAGGACTGC
+ ATAGAGACTT A-CCACCTCT TATTTACCGA GAAAACT-CG CGAGGACTGC
+ ATAGAGGCCT A-CCACTTCT TATTTACCGA GAAAACT-CG CAAGGACTGC
+ ATAGAAGCTT A-CCACTTCT TATTTACCGA GAAAACT-TG CAAGGACCGC
+ ATAGAAGAAT A-TAACTTCT TAATTACCGA GAAAGTG-CG CAAGAACTGC
+
+ TAACTCATGC CTCCATATAT AACAATGTGG CTTTCTT-AC TTTTAAAGGA
+ TAACTCTGCA CTCCGTATAT AAAAATACGG CTATCTCAAC TTTTAAAGGA
+ TAACTCATGC CCCCATGTCT AACAACATGG CTTTCTCAAC TTTTAAAGGA
+ TAATTCATAT CCCCATGCCT GACAACATGG CTTTCTCAAC TTTTAAAGGA
+ TAACTCATAC CCCCGTGCTT GACAACATGG CTTTCTCAAC TTTTAAAGGA
+ TAACTCTCAC T-CCATGTGT GACAACATGG CTTTCTCAGC TTTTAAAGGA
+ TAACTCACTA TCCCATGTAT GACAACATGG CTTTCTCAAC TTTTAAAGGA
+ TAACCCATGT ACCCGTACCT AAAATTACGG TTTTCTCAAC TTTTAAAGGA
+ TAACCCATGT ATCCGTACCT AAAATTACGG TTTTCTCAAC TTTTAAAGGA
+ TAATCCATGC CTCCGTACTT AAAACTACGG TTTCCTCAAC TTTTAAAGGA
+ TAATCCACAC CTCCGTACTT AAAACTACGG TTTTCTCAAC TTTTAAAGGA
+ TAATTCATGC TCCCAAGACT AACAACTTGG CTTCCTCAAC TTTTAAAGGA
+
+ TAGAAGTAAT CCATCGGTCT TAGGAACCGA AAA-ATTGGT GCAACTCCAA
+ TAGAAGTAAT CCATTGGCCT TAGGAGCCAA AAA-ATTGGT GCAACTCCAA
+ TAACAGCTAT CCATTGGTCT TAGGCCCCAA AAATTTTGGT GCAACTCCAA
+ TAACAGCCAT CCGTTGGTCT TAGGCCCCAA AAATTTTGGT GCAACTCCAA
+ TAACAGCTAT CCATTGGTCT TAGGACCCAA AAATTTTGGT GCAACTCCAA
+ TAACAGCTAT CCCTTGGTCT TAGGATCCAA AAATTTTGGT GCAACTCCAA
+ TAACAGCTAT CCATTGGTCT TAGGACCCAA AAATTTTGGT GCAACTCCAA
+ TAACAGCTAT CCATTGACCT TAGGAGTCAA AAACATTGGT GCAACTCCAA
+ TAACAGCTAT CCATTGACCT TAGGAGTCAA AAATATTGGT GCAACTCCAA
+ TAACAGCTAT CCATTGACCT TAGGAGTCAA AAACATTGGT GCAACTCCAA
+ TAACAGCTAT CCATTGGCCT TAGGAGTCAA AAATATTGGT GCAACTCCAA
+ TAGTAGTTAT CCATTGGTCT TAGGAGCCAA AAACATTGGT GCAACTCCAA
+
+ ATAAAAGTAA TAAATTTATT TTCATCCTCC ATTTTACTAT CACTTACACT
+ ATAAAAGTAA TAAATCTATT ATCCTCTTTC ACCCTTGTCA CACTGATTAT
+ ATAAAAGTAA TAACCATGCA CACTACTATA ACCACCCTAA CCCTGACTTC
+ ATAAAAGTAA TAACCATGTA TACTACCATA ACCACCTTAA CCCTAACTCC
+ ATAAAAGTAA TAACTATGTA CGCTACCATA ACCACCTTAG CCCTAACTTC
+ ATAAAAGTAA CAGCCATGTT TACCACCATA ACTGCCCTCA CCTTAACTTC
+ ATAAAAGTAA TAGCAATGTA CACCACCATA GCCATTCTAA CGCTAACCTC
+ ATAAAAGTAA TAATCATGCA CACCCCCATC ATTATAACAA CCCTTATCTC
+ ATAAAAGTAA TAATCATGCA CACCCCTATC ATAATAACAA CCCTTATCTC
+ ATAAAAGTAA TAATCATGCA CACCCCCATC ATAATAACAA CCCTCATCTC
+ ATAAAAGTAA TAATCATGTA TACCCCCATC ATAATAACAA CTCTCATCTC
+ ATAAAAGTAA TA---ATACA CTTCTCCATC ACTCTAATAA CACTAATTAG
+
+ CTTAATTACC CCATTTATTA TTACAACAAC TAAAAAATAT GAAACACATG
+ CCTAACTTTA CCTATCATTA TAAACGTTAC AAACATATAC AAAAACTACC
+ CCTAATTCCC CCCATCCTTA CCACCCTCGT TAACCCTAAC AAAAAAAACT
+ CTTAATTCTC CCCATCCTCA CCACCCTCAT TAACCCTAAC AAAAAAAACT
+ CTTAATTCCC CCTATCCTTA CCACCTTCAT CAATCCTAAC AAAAAAAGCT
+ CCTAATCCCC CCCATTACCG CTACCCTCAT TAACCCCAAC AAAAAAAACC
+ CCTAATTCCC CCCATTACAG CCACCCTTAT TAACCCCAAT AAAAAGAACT
+ CCTAACTCTC CCAATTTTTG CCACCCTCAT CAACCCTTAC AAAAAACGTC
+ CCTAACTCTC CCAATTTTTG CCACCCTCAT CAACCCTTAC AAAAAACGTC
+ CCTGACCCTT CCAATTTTTG CCACCCTCAC CAACCCCTAT AAAAAACGTT
+ CCTAACTCTT CCAATTTTCG CTACCCTTAT CAACCCCAAC AAAAAACACC
+ CCTACTAGCG CCAATCCTAG CTACCCTCAT TAACCCTAAC AAAAGCACAC
+
+ CATACCCTTA CTACGTAAAA AACTCTATCG CCTGCGCATT TATAACAAGC
+ CCTATGCACC ATACGTAAAA TCTTCTATTG CATGTGCCTT CATCACTAGC
+ CATACCCCCA TTATGTAAAA TCCATTGTCG CATCCACCTT TATTATCAGT
+ CATATCCCCA TTATGTGAAA TCCATTATCG CGTCCACCTT TATCATTAGC
+ CATACCCCCA TTACGTAAAA TCTATCGTCG CATCCACCTT TATCATCAGC
+ CATACCCCCA CTATGTAAAA ACGGCCATCG CATCCGCCTT TACTATCAGC
+ TATACCCGCA CTACGTAAAA ATGACCATTG CCTCTACCTT TATAATCAGC
+ CATACCCAGA TTACGTAAAA ACAACCGTAA TATATGCTTT CATCATCAGC
+ CATACCCAGA TTACGTAAAA ACAACCGTAA TATATGCTTT CATCATCAGC
+ CATACCCAGA CTACGTAAAA ACAACCGTAA TATATGCTTT TATTACCAGT
+ TATATCCAAA CTACGTAAAA ACAGCCGTAA TATATGCTTT CATTACCAGC
+ TATACCCGTA CTACGTAAAA CTAGCCATCA TCTACGCCCT CATTACCAGT
+
+ CTAGTCCCAA TGCTCATATT TCTATACACA AATCAAGAAA TAATCATTTC
+ CTCATCCCAA CTATATTATT TATCTCCTCA GGACAAGAAA CAATCATTTC
+ CTCTTCCCCA CAACAATATT CATGTGCCTA GACCAAGAAG TTATTATCTC
+ CTTTTCCCCA CAACAATATT CATATGCCTA GACCAAGAAG CTATTATCTC
+ CTCTTCCCCA CAACAATATT TCTATGCCTA GACCAAGAAG CTATTATCTC
+ CTTATCCCAA CAACAATATT TATCTGCCTA GGACAAGAAA CCATCGTCAC
+ CTATTTCCCA CAATAATATT CATGTGCACA GACCAAGAAA CCATTATTTC
+ CTCCCCTCAA CAACTTTATT CATCTTCTCA AACCAAGAAA CAACCATTTG
+ CTCCCCTCAA CAACTTTATT CATCTTCTCA AACCAAGAAA CAACCATTTG
+ CTCCCCTCAA CAACCCTATT CATCCTCTCA AACCAAGAAA CAACCATTTG
+ CTCTCTTCAA CAACTTTATA TATATTCTTA AACCAAGAAA CAATCATCTG
+ ACCTTATCTA TAATATTCTT TATCCTTACA GGCCAAGAAT CAATAATTTC
+
+ CAACTGACAT TGAATAACGA TTCATACTAT CAAATTATGC CTAAGCTT
+ CAACTGACAT TGAATAACAA TCCAAACCCT AAAACTATCT ATTAGCTT
+ GAACTGACAC TGAGCCACAA CCCAAACAAC CCAGCTCTCC CTAAGCTT
+ AAACTGGCAC TGAGCAACAA CCCAAACAAC CCAGCTCTCC CTAAGCTT
+ AAGCTGACAC TGAGCAACAA CCCAAACAAT TCAACTCTCC CTAAGCTT
+ AAACTGATGC TGAACAACCA CCCAGACACT ACAACTCTCA CTAAGCTT
+ AAACTGACAC TGAACTGCAA CCCAAACGCT AGAACTCTCC CTAAGCTT
+ GAGCTGACAT TGAATAATGA CCCAAACACT AGACCTAACG CTAAGCTT
+ AAGCTGACAT TGAATAATAA CCCAAACACT AGACCTAACA CTAAGCTT
+ GAGTTGACAT TGAATAACAA CCCAAACATT AGACCTAACA CTAAGCTT
+ AAGCTGGCAC TGAATAATAA CCCAAACACT AAGCCTAACA TTAAGCTT
+ AAACTGACAC TGAATAACTA TCCAAACCAT CAAACTATCC CTAAGCTT
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