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Note Bio.Encodings, Bio.PropertyManager and Bio.utils are obsolete in…

… DEPRECATED file.
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1 parent ec28326 commit 61280146d415ccb3b0946b8f5abfd9717a327e28 @peterjc peterjc committed Aug 30, 2010
Showing with 10 additions and 1 deletion.
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11 DEPRECATED
@@ -16,6 +16,14 @@ support for Python 2.4. This can be delayed given feedback from our users
(e.g. if this proves to be a problem in combination with other libraries).
An explicit warning was added to setup.py for Biopython 1.55.
+Bio.Encodings
+=============
+Declared obsolete in Release 1.55.
+
+Bio.PropertyManager
+===================
+Declared obsolete in Biopython 1.55.
+
Bio.InterPro
============
This module was a parser for the EBI InterPro webpages, but no longer works
@@ -184,7 +192,7 @@ in Release 1.55 final. Please use the "fasta" support in Bio.SeqIO or
Bio.AlignIO instead.
Bio.Align.FormatConvert
-=======================
+======================
Declared obsolete in Release 1.48, deprecated in Release 1.51, and
removed in Release 1.55 final. Please use Bio.AlignIO or the Alignment
object's format method instead.
@@ -414,6 +422,7 @@ Bio.utils
Functions 'translate', 'translate_to_stop', 'back_translate', 'transcribe',
and 'back_transcribe' were deprecated in Release 1.49, and removed in Release
1.53. Function 'ungap' was deprecated in Release 1.53. Use Bio.Seq instead.
+The whole of Bio.utils was declared obsolete in Release 1.55.
Bio.Motif
=========

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