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Fix typos.

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commit 823d2ea8041e586649a5aea61b8434f61710bc9e 1 parent d9500da
@cbrueffer cbrueffer authored peterjc committed
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2  Bio/Align/Applications/_Prank.py
@@ -42,7 +42,7 @@ class PrankCommandline(AbstractCommandline):
prevents errors in sequence alignment and evolutionary analysis.
Science, 320: 1632.
- Last checked agains version: 081202
+ Last checked against version: 081202
"""
def __init__(self, cmd="prank", **kwargs):
OUTPUT_FORMAT_VALUES = list(range(1,18))
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2  Bio/Align/Applications/_Probcons.py
@@ -51,7 +51,7 @@ class ProbconsCommandline(AbstractCommandline):
PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment.
Genome Research 15: 330-340.
- Last checked agains version: 1.12
+ Last checked against version: 1.12
"""
def __init__(self, cmd="probcons", **kwargs):
self.parameters = \
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4 Tests/test_Emboss.py
@@ -133,7 +133,7 @@ def emboss_piped_SeqIO_convert(records, old_format, new_format):
SeqIO.write(records, child.stdin, old_format)
child.stdin.close()
child.stderr.close()
- #TODO - Is there a nice way to return an interator AND
+ #TODO - Is there a nice way to return an iterator AND
#automatically close the handle?
records = list(SeqIO.parse(child.stdout, new_format))
child.stdout.close()
@@ -165,7 +165,7 @@ def emboss_piped_AlignIO_convert(alignments, old_format, new_format):
raise
child.stdin.close()
child.stderr.close()
- #TODO - Is there a nice way to return an interator AND
+ #TODO - Is there a nice way to return an iterator AND
#automatically close the handle?
try:
aligns = list(AlignIO.parse(child.stdout, new_format))
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