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Add test case for vulgar format with protein query + frameshift

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1 parent d984c31 commit 8346b1643cf01c716cb74c3cc096de23360e3d0b @bow bow committed Aug 16, 2012
Showing with 6 additions and 0 deletions.
  1. +1 −0 Tests/Exonerate/README.txt
  2. +5 −0 Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn
@@ -25,6 +25,7 @@ exn_22_m_ungapped_trans.exn ungapped:translated model alignment
exn_22_o_vulgar_cigar.exn genome2genome alignment with vulgar and cigar lines only
exn_22_o_vulgar.exn genome2genome alignment with vulgar lines only
exn_22_o_vulgar_fshifts.exn coding2coding alignment with vulgar lines only, frameshifts
+exn_22_o_vulgar_fshifts2.exn protein2dna alignment with vulgar lines only, frameshifts
exn_22_q_multiple.exn est2genome, multiple queries, multiple hits and hsps
exn_22_q_multiple_vulgar.exn est2genome, multiple queries, multiple hits and hsps, vulgar lines only
@@ -0,0 +1,5 @@
+Command line: [exonerate -m protein2dna scer_cad1_prot.fa scer_cad1frameshift.fa --showvulgar yes --showalignment no --bestn 3]
+Hostname: [blackbriar]
+vulgar: sp|P24813|YAP2_YEAST 330 409 . gi|296143771|ref|NM_001180731.1| 216 455 + 367 M 43 129 F 0 2 M 36 108
+vulgar: sp|P24813|YAP2_YEAST 6 70 . gi|296143771|ref|NM_001180731.1| 16 208 + 322 M 64 192
+-- completed exonerate analysis

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