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Remove hit.score and hit.evalue from blast-text results

These hit-level statistics are basically the 'best' hsp statistics so the user
can still access them from the HSPs.
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commit 8555f7ecc43354f2a801af7f88d49b6df29451ae 1 parent 6fec364
Wibowo Arindrarto authored September 29, 2012
7  Bio/SearchIO/BlastIO/blast_text.py
@@ -129,13 +129,6 @@ def __iter__(self):
129 129
 
130 130
                 hit = Hit(hsp_list)
131 131
                 hit.seq_len = aln.length
132  
-                # get hit-level e-value and score, if available
133  
-                try:
134  
-                    hit.evalue = rec.descriptions[idx].e
135  
-                    hit.score = rec.descriptions[idx].score
136  
-                except IndexError:
137  
-                    pass
138  
-
139 132
                 hit.description = hdesc
140 133
                 qresult.append(hit)
141 134
 
72  Tests/test_SearchIO_blast_text.py
@@ -77,8 +77,6 @@ def test_text_2226_blastn_002(self):
77 77
         self.assertEqual('ref|NM_013633.3|', hit.id)
78 78
         self.assertEqual('Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA', hit.description)
79 79
         self.assertEqual(1353, hit.seq_len)
80  
-        self.assertEqual(905, hit.score)
81  
-        self.assertEqual(0.0, hit.evalue)
82 80
         self.assertEqual(1, len(hit))
83 81
         # first qresult, first hit, first hsp
84 82
         hsp = qresult[0].hsps[0]
@@ -108,8 +106,6 @@ def test_text_2226_blastn_002(self):
108 106
         self.assertEqual('ref|XR_141831.1|', hit.id)
109 107
         self.assertEqual('PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_105837.2| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141464.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141446.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA', hit.description)
110 108
         self.assertEqual(570, hit.seq_len)
111  
-        self.assertEqual(900, hit.score)
112  
-        self.assertEqual(0.0, hit.evalue)
113 109
         self.assertEqual(1, len(hit))
114 110
         # first qresult, second hit, first hsp
115 111
         hsp = qresult[1].hsps[0]
@@ -157,8 +153,6 @@ def test_text_2226_blastn_003(self):
157 153
         self.assertEqual('ref|XM_003267724.1|', hit.id)
158 154
         self.assertEqual('PREDICTED: Nomascus leucogenys ATG14 autophagy related 14 homolog (S. cerevisiae) (ATG14), mRNA', hit.description)
159 155
         self.assertEqual(4771, hit.seq_len)
160  
-        self.assertEqual(115, hit.score)
161  
-        self.assertEqual(3e-24, hit.evalue)
162 156
         self.assertEqual(1, len(hit))
163 157
         # first qresult, first hit, first hsp
164 158
         hsp = qresult[0].hsps[0]
@@ -188,8 +182,6 @@ def test_text_2226_blastn_003(self):
188 182
         self.assertEqual('ref|NM_001040441.1|', hit.id)
189 183
         self.assertEqual('Homo sapiens zinc finger and BTB domain containing 8A (ZBTB8A), mRNA', hit.description)
190 184
         self.assertEqual(7333, hit.seq_len)
191  
-        self.assertEqual(115, hit.score)
192  
-        self.assertEqual(3e-24, hit.evalue)
193 185
         self.assertEqual(2, len(hit))
194 186
         # first qresult, second hit, first hsp
195 187
         hsp = qresult[1].hsps[0]
@@ -270,8 +262,6 @@ def test_text_2226_blastn_004(self):
270 262
         self.assertEqual('gi|356995852|ref|NM_013633.3|', hit.id)
271 263
         self.assertEqual('Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA', hit.description)
272 264
         self.assertEqual(1353, hit.seq_len)
273  
-        self.assertEqual(905, hit.score)
274  
-        self.assertEqual(0.0, hit.evalue)
275 265
         self.assertEqual(1, len(hit))
276 266
         # second qresult, first hit, first hsp
277 267
         hsp = qresult[0].hsps[0]
@@ -301,8 +291,6 @@ def test_text_2226_blastn_004(self):
301 291
         self.assertEqual('gi|377833530|ref|XR_141831.1|', hit.id)
302 292
         self.assertEqual('PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA', hit.description)
303 293
         self.assertEqual(570, hit.seq_len)
304  
-        self.assertEqual(900, hit.score)
305  
-        self.assertEqual(0.0, hit.evalue)
306 294
         self.assertEqual(1, len(hit))
307 295
         # second qresult, second hit, first hsp
308 296
         hsp = qresult[1].hsps[0]
@@ -342,8 +330,6 @@ def test_text_2226_blastn_004(self):
342 330
         self.assertEqual('gi|94721341|ref|NM_001040441.1|', hit.id)
343 331
         self.assertEqual('Homo sapiens zinc finger and BTB domain containing 8A (ZBTB8A), mRNA', hit.description)
344 332
         self.assertEqual(7333, hit.seq_len)
345  
-        self.assertEqual(115, hit.score)
346  
-        self.assertEqual(6e-29, hit.evalue)
347 333
         self.assertEqual(2, len(hit))
348 334
         # third qresult, first hit, first hsp
349 335
         hsp = qresult[0].hsps[0]
@@ -396,8 +382,6 @@ def test_text_2226_blastn_004(self):
396 382
         self.assertEqual('gi|332237160|ref|XM_003267724.1|', hit.id)
397 383
         self.assertEqual('PREDICTED: Nomascus leucogenys ATG14 autophagy related 14 homolog (S. cerevisiae) (ATG14), mRNA', hit.description)
398 384
         self.assertEqual(4771, hit.seq_len)
399  
-        self.assertEqual(115, hit.score)
400  
-        self.assertEqual(6e-29, hit.evalue)
401 385
         self.assertEqual(1, len(hit))
402 386
         # third qresult, second hit, first hsp
403 387
         hsp = qresult[1].hsps[0]
@@ -466,8 +450,6 @@ def test_text_2226_blastp_002(self):
466 450
         self.assertEqual('ref|NP_391444.1|', hit.id)
467 451
         self.assertEqual('membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168] ref|ZP_03593363.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168] ref|ZP_03597648.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. NCIB 3610] ref|ZP_03602051.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. JH642] ref|ZP_03606337.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. SMY] ref|YP_004205398.1| unnamed protein product [Bacillus subtilis BSn5]', hit.description)
468 452
         self.assertEqual(102, hit.seq_len)
469  
-        self.assertEqual(205, hit.score)
470  
-        self.assertEqual(1e-66, hit.evalue)
471 453
         self.assertEqual(1, len(hit))
472 454
         # first qresult, first hit, first hsp
473 455
         hsp = qresult[0].hsps[0]
@@ -497,8 +479,6 @@ def test_text_2226_blastp_002(self):
497 479
         self.assertEqual('ref|YP_003922001.1|', hit.id)
498 480
         self.assertEqual('membrane bound lipoprotein [Bacillus amyloliquefaciens DSM 7]', hit.description)
499 481
         self.assertEqual(100, hit.seq_len)
500  
-        self.assertEqual(139, hit.score)
501  
-        self.assertEqual(1e-40, hit.evalue)
502 482
         self.assertEqual(1, len(hit))
503 483
         # first qresult, second hit, first hsp
504 484
         hsp = qresult[1].hsps[0]
@@ -546,8 +526,6 @@ def test_text_2226_blastp_003(self):
546 526
         self.assertEqual('ref|NP_062422.1|', hit.id)
547 527
         self.assertEqual('pleckstrin [Mus musculus]', hit.description)
548 528
         self.assertEqual(350, hit.seq_len)
549  
-        self.assertEqual(205, hit.score)
550  
-        self.assertEqual(1e-63, hit.evalue)
551 529
         self.assertEqual(2, len(hit))
552 530
         # first qresult, first hit, first hsp
553 531
         hsp = qresult[0].hsps[0]
@@ -600,8 +578,6 @@ def test_text_2226_blastp_003(self):
600 578
         self.assertEqual('ref|XP_003502426.1|', hit.id)
601 579
         self.assertEqual('PREDICTED: pleckstrin-like [Cricetulus griseus]', hit.description)
602 580
         self.assertEqual(350, hit.seq_len)
603  
-        self.assertEqual(205, hit.score)
604  
-        self.assertEqual(2e-63, hit.evalue)
605 581
         self.assertEqual(2, len(hit))
606 582
         # first qresult, second hit, first hsp
607 583
         hsp = qresult[1].hsps[0]
@@ -682,8 +658,6 @@ def test_text_2226_blastp_004(self):
682 658
         self.assertEqual('gi|308175296|ref|YP_003922001.1|', hit.id)
683 659
         self.assertEqual('membrane bound lipoprotein [Bacillus amyloliquefaciens DSM 7]', hit.description)
684 660
         self.assertEqual(100, hit.seq_len)
685  
-        self.assertEqual(139, hit.score)
686  
-        self.assertEqual(2e-46, hit.evalue)
687 661
         self.assertEqual(1, len(hit))
688 662
         # second qresult, first hit, first hsp
689 663
         hsp = qresult[0].hsps[0]
@@ -713,8 +687,6 @@ def test_text_2226_blastp_004(self):
713 687
         self.assertEqual('gi|375363999|ref|YP_005132038.1|', hit.id)
714 688
         self.assertEqual('lytA gene product [Bacillus amyloliquefaciens subsp. plantarum CAU B946]', hit.description)
715 689
         self.assertEqual(105, hit.seq_len)
716  
-        self.assertEqual(89, hit.score)
717  
-        self.assertEqual(7e-27, hit.evalue)
718 690
         self.assertEqual(1, len(hit))
719 691
         # second qresult, second hit, first hsp
720 692
         hsp = qresult[1].hsps[0]
@@ -754,8 +726,6 @@ def test_text_2226_blastp_004(self):
754 726
         self.assertEqual('gi|11464971|ref|NP_062422.1|', hit.id)
755 727
         self.assertEqual('pleckstrin [Mus musculus]', hit.description)
756 728
         self.assertEqual(350, hit.seq_len)
757  
-        self.assertEqual(205, hit.score)
758  
-        self.assertEqual(2e-69, hit.evalue)
759 729
         self.assertEqual(2, len(hit))
760 730
         # third qresult, first hit, first hsp
761 731
         hsp = qresult[0].hsps[0]
@@ -808,8 +778,6 @@ def test_text_2226_blastp_004(self):
808 778
         self.assertEqual('gi|354480464|ref|XP_003502426.1|', hit.id)
809 779
         self.assertEqual('PREDICTED: pleckstrin-like [Cricetulus griseus]', hit.description)
810 780
         self.assertEqual(350, hit.seq_len)
811  
-        self.assertEqual(205, hit.score)
812  
-        self.assertEqual(3e-69, hit.evalue)
813 781
         self.assertEqual(2, len(hit))
814 782
         # third qresult, second hit, first hsp
815 783
         hsp = qresult[1].hsps[0]
@@ -901,8 +869,6 @@ def test_text_2226_blastx_002(self):
901 869
         self.assertEqual('ref|NP_038661.2|', hit.id)
902 870
         self.assertEqual('POU domain, class 5, transcription factor 1 isoform 1 [Mus musculus]', hit.description)
903 871
         self.assertEqual(352, hit.seq_len)
904  
-        self.assertEqual(192, hit.score)
905  
-        self.assertEqual(4e-57, hit.evalue)
906 872
         self.assertEqual(1, len(hit))
907 873
         # first qresult, first hit, first hsp
908 874
         hsp = qresult[0].hsps[0]
@@ -932,8 +898,6 @@ def test_text_2226_blastx_002(self):
932 898
         self.assertEqual('ref|NP_001009178.1|', hit.id)
933 899
         self.assertEqual('POU class 5 homeobox 1 [Rattus norvegicus]', hit.description)
934 900
         self.assertEqual(352, hit.seq_len)
935  
-        self.assertEqual(179, hit.score)
936  
-        self.assertEqual(3e-52, hit.evalue)
937 901
         self.assertEqual(1, len(hit))
938 902
         # first qresult, second hit, first hsp
939 903
         hsp = qresult[1].hsps[0]
@@ -981,8 +945,6 @@ def test_text_2226_blastx_003(self):
981 945
         self.assertEqual('ref|XP_003278367.1|', hit.id)
982 946
         self.assertEqual('PREDICTED: UPF0764 protein C16orf89-like [Nomascus leucogenys]', hit.description)
983 947
         self.assertEqual(132, hit.seq_len)
984  
-        self.assertEqual(121, hit.score)
985  
-        self.assertEqual(2e-32, hit.evalue)
986 948
         self.assertEqual(2, len(hit))
987 949
         # first qresult, first hit, first hsp
988 950
         hsp = qresult[0].hsps[0]
@@ -1035,8 +997,6 @@ def test_text_2226_blastx_003(self):
1035 997
         self.assertEqual('ref|NP_001243358.1|', hit.id)
1036 998
         self.assertEqual('PDZ and LIM domain protein 5 isoform i [Homo sapiens]', hit.description)
1037 999
         self.assertEqual(136, hit.seq_len)
1038  
-        self.assertEqual(114, hit.score)
1039  
-        self.assertEqual(1e-29, hit.evalue)
1040 1000
         self.assertEqual(2, len(hit))
1041 1001
         # first qresult, second hit, first hsp
1042 1002
         hsp = qresult[1].hsps[0]
@@ -1117,8 +1077,6 @@ def test_text_2226_blastx_004(self):
1117 1077
         self.assertEqual('gi|332258565|ref|XP_003278367.1|', hit.id)
1118 1078
         self.assertEqual('PREDICTED: UPF0764 protein C16orf89-like [Nomascus leucogenys]', hit.description)
1119 1079
         self.assertEqual(132, hit.seq_len)
1120  
-        self.assertEqual(121, hit.score)
1121  
-        self.assertEqual(3e-38, hit.evalue)
1122 1080
         self.assertEqual(2, len(hit))
1123 1081
         # second qresult, first hit, first hsp
1124 1082
         hsp = qresult[0].hsps[0]
@@ -1171,8 +1129,6 @@ def test_text_2226_blastx_004(self):
1171 1129
         self.assertEqual('gi|374093214|ref|NP_001243358.1|', hit.id)
1172 1130
         self.assertEqual('PDZ and LIM domain protein 5 isoform i [Homo sapiens]', hit.description)
1173 1131
         self.assertEqual(136, hit.seq_len)
1174  
-        self.assertEqual(114, hit.score)
1175  
-        self.assertEqual(2e-35, hit.evalue)
1176 1132
         self.assertEqual(2, len(hit))
1177 1133
         # second qresult, second hit, first hsp
1178 1134
         hsp = qresult[1].hsps[0]
@@ -1264,8 +1220,6 @@ def test_text_2226_tblastn_002(self):
1264 1220
         self.assertEqual('ref|XM_001425911.1|', hit.id)
1265 1221
         self.assertEqual('Paramecium tetraurelia hypothetical protein (GSPATT00004923001) partial mRNA', hit.description)
1266 1222
         self.assertEqual(4632, hit.seq_len)
1267  
-        self.assertEqual(34, hit.score)
1268  
-        self.assertEqual(0.74, hit.evalue)
1269 1223
         self.assertEqual(1, len(hit))
1270 1224
         # first qresult, first hit, first hsp
1271 1225
         hsp = qresult[0].hsps[0]
@@ -1295,8 +1249,6 @@ def test_text_2226_tblastn_002(self):
1295 1249
         self.assertEqual('ref|XM_003382561.1|', hit.id)
1296 1250
         self.assertEqual('PREDICTED: Amphimedon queenslandica CWF19-like protein 1-like (LOC100635130), mRNA', hit.description)
1297 1251
         self.assertEqual(1811, hit.seq_len)
1298  
-        self.assertEqual(32, hit.score)
1299  
-        self.assertEqual(6.4, hit.evalue)
1300 1252
         self.assertEqual(1, len(hit))
1301 1253
         # first qresult, second hit, first hsp
1302 1254
         hsp = qresult[1].hsps[0]
@@ -1344,8 +1296,6 @@ def test_text_2226_tblastn_003(self):
1344 1296
         self.assertEqual('ref|XM_003502378.1|', hit.id)
1345 1297
         self.assertEqual('PREDICTED: Cricetulus griseus pleckstrin-like (LOC100773128), mRNA', hit.description)
1346 1298
         self.assertEqual(1119, hit.seq_len)
1347  
-        self.assertEqual(205, hit.score)
1348  
-        self.assertEqual(1e-63, hit.evalue)
1349 1299
         self.assertEqual(2, len(hit))
1350 1300
         # first qresult, first hit, first hsp
1351 1301
         hsp = qresult[0].hsps[0]
@@ -1398,8 +1348,6 @@ def test_text_2226_tblastn_003(self):
1398 1348
         self.assertEqual('ref|XM_003360601.2|', hit.id)
1399 1349
         self.assertEqual('PREDICTED: Sus scrofa pleckstrin-like (LOC100626968), mRNA', hit.description)
1400 1350
         self.assertEqual(772, hit.seq_len)
1401  
-        self.assertEqual(199, hit.score)
1402  
-        self.assertEqual(1e-62, hit.evalue)
1403 1351
         self.assertEqual(2, len(hit))
1404 1352
         # first qresult, second hit, first hsp
1405 1353
         hsp = qresult[1].hsps[0]
@@ -1480,8 +1428,6 @@ def test_text_2226_tblastn_004(self):
1480 1428
         self.assertEqual('gi|145479850|ref|XM_001425911.1|', hit.id)
1481 1429
         self.assertEqual('Paramecium tetraurelia hypothetical protein (GSPATT00004923001) partial mRNA', hit.description)
1482 1430
         self.assertEqual(4632, hit.seq_len)
1483  
-        self.assertEqual(34, hit.score)
1484  
-        self.assertEqual(1e-05, hit.evalue)
1485 1431
         self.assertEqual(1, len(hit))
1486 1432
         # second qresult, first hit, first hsp
1487 1433
         hsp = qresult[0].hsps[0]
@@ -1511,8 +1457,6 @@ def test_text_2226_tblastn_004(self):
1511 1457
         self.assertEqual('gi|72012412|ref|XM_777959.1|', hit.id)
1512 1458
         self.assertEqual('PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746 (LOC577746), mRNA', hit.description)
1513 1459
         self.assertEqual(1593, hit.seq_len)
1514  
-        self.assertEqual(31, hit.score)
1515  
-        self.assertEqual(0.0001, hit.evalue)
1516 1460
         self.assertEqual(1, len(hit))
1517 1461
         # second qresult, second hit, first hsp
1518 1462
         hsp = qresult[1].hsps[0]
@@ -1552,8 +1496,6 @@ def test_text_2226_tblastn_004(self):
1552 1496
         self.assertEqual('gi|350596019|ref|XM_003360601.2|', hit.id)
1553 1497
         self.assertEqual('PREDICTED: Sus scrofa pleckstrin-like (LOC100626968), mRNA', hit.description)
1554 1498
         self.assertEqual(772, hit.seq_len)
1555  
-        self.assertEqual(199, hit.score)
1556  
-        self.assertEqual(2e-67, hit.evalue)
1557 1499
         self.assertEqual(2, len(hit))
1558 1500
         # third qresult, first hit, first hsp
1559 1501
         hsp = qresult[0].hsps[0]
@@ -1606,8 +1548,6 @@ def test_text_2226_tblastn_004(self):
1606 1548
         self.assertEqual('gi|301779869|ref|XM_002925302.1|', hit.id)
1607 1549
         self.assertEqual('PREDICTED: Ailuropoda melanoleuca pleckstrin-like (LOC100466932), mRNA', hit.description)
1608 1550
         self.assertEqual(1144, hit.seq_len)
1609  
-        self.assertEqual(202, hit.score)
1610  
-        self.assertEqual(2e-67, hit.evalue)
1611 1551
         self.assertEqual(2, len(hit))
1612 1552
         # third qresult, second hit, first hsp
1613 1553
         hsp = qresult[1].hsps[0]
@@ -1699,8 +1639,6 @@ def test_text_2226_tblastx_002(self):
1699 1639
         self.assertEqual('ref|NM_013633.3|', hit.id)
1700 1640
         self.assertEqual('Mus musculus POU domain, class 5, transcription factor 1 (Pou5f1), transcript variant 1, mRNA', hit.description)
1701 1641
         self.assertEqual(1353, hit.seq_len)
1702  
-        self.assertEqual(418, hit.score)
1703  
-        self.assertEqual(2e-115, hit.evalue)
1704 1642
         self.assertEqual(1, len(hit))
1705 1643
         # first qresult, first hit, first hsp
1706 1644
         hsp = qresult[0].hsps[0]
@@ -1730,8 +1668,6 @@ def test_text_2226_tblastx_002(self):
1730 1668
         self.assertEqual('ref|XR_141831.1|', hit.id)
1731 1669
         self.assertEqual('PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_105837.2| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141464.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA ref|XR_141446.1| PREDICTED: Mus musculus predicted gene, 19553 (Gm19553), miscRNA', hit.description)
1732 1670
         self.assertEqual(570, hit.seq_len)
1733  
-        self.assertEqual(415, hit.score)
1734  
-        self.assertEqual(3e-114, hit.evalue)
1735 1671
         self.assertEqual(1, len(hit))
1736 1672
         # first qresult, second hit, first hsp
1737 1673
         hsp = qresult[1].hsps[0]
@@ -1779,8 +1715,6 @@ def test_text_2226_tblastx_003(self):
1779 1715
         self.assertEqual('ref|NM_002985.2|', hit.id)
1780 1716
         self.assertEqual('Homo sapiens chemokine (C-C motif) ligand 5 (CCL5), mRNA', hit.description)
1781 1717
         self.assertEqual(1237, hit.seq_len)
1782  
-        self.assertEqual(118, hit.score)
1783  
-        self.assertEqual(4e-49, hit.evalue)
1784 1718
         self.assertEqual(3, len(hit))
1785 1719
         # first qresult, first hit, first hsp
1786 1720
         hsp = qresult[0].hsps[0]
@@ -1833,8 +1767,6 @@ def test_text_2226_tblastx_003(self):
1833 1767
         self.assertEqual('ref|XM_003255417.1|', hit.id)
1834 1768
         self.assertEqual('PREDICTED: Nomascus leucogenys 5\'-nucleotidase, cytosolic II, transcript variant 2 (NT5C2), mRNA', hit.description)
1835 1769
         self.assertEqual(3285, hit.seq_len)
1836  
-        self.assertEqual(197, hit.score)
1837  
-        self.assertEqual(9e-49, hit.evalue)
1838 1770
         self.assertEqual(3, len(hit))
1839 1771
         # first qresult, second hit, first hsp
1840 1772
         hsp = qresult[1].hsps[0]
@@ -1915,8 +1847,6 @@ def test_text_2226_tblastx_004(self):
1915 1847
         self.assertEqual('gi|296147483|ref|NM_001183135.1|', hit.id)
1916 1848
         self.assertEqual('Saccharomyces cerevisiae S288c Mon2p (MON2) mRNA, complete cds', hit.description)
1917 1849
         self.assertEqual(4911, hit.seq_len)
1918  
-        self.assertEqual(289, hit.score)
1919  
-        self.assertEqual(2e-81, hit.evalue)
1920 1850
         self.assertEqual(8, len(hit))
1921 1851
         # second qresult, first hit, first hsp
1922 1852
         hsp = qresult[0].hsps[0]
@@ -1969,8 +1899,6 @@ def test_text_2226_tblastx_004(self):
1969 1899
         self.assertEqual('gi|365982352|ref|XM_003667962.1|', hit.id)
1970 1900
         self.assertEqual('Naumovozyma dairenensis CBS 421 hypothetical protein (NDAI0A06120), mRNA', hit.description)
1971 1901
         self.assertEqual(4932, hit.seq_len)
1972  
-        self.assertEqual(152, hit.score)
1973  
-        self.assertEqual(5e-42, hit.evalue)
1974 1902
         self.assertEqual(10, len(hit))
1975 1903
         # second qresult, second hit, first hsp
1976 1904
         hsp = qresult[1].hsps[0]

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