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Updated some DTD files from NCBI

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commit 9a301b5d1cecad1bb2fee3920f73740448f9aa4f 1 parent 0dcc7ff
Michiel de Hoon authored
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33 Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd
@@ -1,7 +1,7 @@
<!-- ============================================
::DATATOOL:: Generated from "gbseq.asn"
- ::DATATOOL:: by application DATATOOL version 2.0.0
- ::DATATOOL:: on 08/02/2010 23:05:14
+ ::DATATOOL:: by application DATATOOL version 2.4.4
+ ::DATATOOL:: on 12/18/2013 23:04:02
============================================ -->
<!-- ============================================ -->
@@ -9,7 +9,7 @@
================================================= -->
<!--
-$Revision: 192669 $
+$Revision: 413850 $
*********************************************************
ASN.1 and XML for the components of a GenBank format sequence
@@ -98,17 +98,17 @@ $Revision: 192669 $
<!ELEMENT GBSeq (
- GBSeq_locus,
+ GBSeq_locus?,
GBSeq_length,
GBSeq_strandedness?,
GBSeq_moltype,
GBSeq_topology?,
- GBSeq_division,
- GBSeq_update-date,
+ GBSeq_division?,
+ GBSeq_update-date?,
GBSeq_create-date?,
GBSeq_update-release?,
GBSeq_create-release?,
- GBSeq_definition,
+ GBSeq_definition?,
GBSeq_primary-accession?,
GBSeq_entry-version?,
GBSeq_accession-version?,
@@ -131,7 +131,8 @@ $Revision: 192669 $
GBSeq_feature-set?,
GBSeq_sequence?,
GBSeq_contig?,
- GBSeq_alt-seq?)>
+ GBSeq_alt-seq?,
+ GBSeq_xrefs?)>
<!ELEMENT GBSeq_locus (#PCDATA)>
@@ -202,6 +203,8 @@ $Revision: 192669 $
<!ELEMENT GBSeq_alt-seq (GBAltSeqData*)>
+<!ELEMENT GBSeq_xrefs (GBXref*)>
+
<!ELEMENT GBSeqid (#PCDATA)>
@@ -263,19 +266,7 @@ $Revision: 192669 $
<!ELEMENT GBComment_paragraphs (GBCommentParagraph*)>
-<!ELEMENT GBCommentParagraph (
- GBCommentParagraph_items)>
-
-<!ELEMENT GBCommentParagraph_items (GBCommentItem*)>
-
-
-<!ELEMENT GBCommentItem (
- GBCommentItem_value?,
- GBCommentItem_url?)>
-
-<!ELEMENT GBCommentItem_value (#PCDATA)>
-
-<!ELEMENT GBCommentItem_url (#PCDATA)>
+<!ELEMENT GBCommentParagraph (#PCDATA)>
<!ELEMENT GBStrucComment (
View
10 Bio/Entrez/DTDs/eInfo_020511.dtd
@@ -1,6 +1,6 @@
<!--
This is the Current DTD for Entrez eInfo
-$Id: eInfo_020511.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
+$Id: eInfo_020511.dtd 393292 2013-03-22 21:30:47Z fialkov $
-->
<!-- ================================================================= -->
@@ -8,6 +8,7 @@ $Id: eInfo_020511.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
<!ELEMENT Name (#PCDATA)> <!-- .+ -->
<!ELEMENT FullName (#PCDATA)> <!-- .+ -->
<!ELEMENT Description (#PCDATA)> <!-- .+ -->
+<!ELEMENT DbBuild (#PCDATA)> <!-- .+ -->
<!ELEMENT TermCount (#PCDATA)> <!-- \d+ -->
<!ELEMENT Menu (#PCDATA)> <!-- .+ -->
<!ELEMENT DbTo (#PCDATA)> <!-- \S+ -->
@@ -22,6 +23,8 @@ $Id: eInfo_020511.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
<!ELEMENT SingleToken (#PCDATA)> <!-- (Y|N) -->
<!ELEMENT Hierarchy (#PCDATA)> <!-- (Y|N) -->
<!ELEMENT IsHidden (#PCDATA)> <!-- (Y|N) -->
+<!ELEMENT IsRangable (#PCDATA)> <!-- (Y|N) -->
+<!ELEMENT IsTruncatable (#PCDATA)> <!-- (Y|N) -->
<!ELEMENT DbList (DbName+)>
@@ -34,7 +37,9 @@ $Id: eInfo_020511.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
IsNumerical,
SingleToken,
Hierarchy,
- IsHidden)>
+ IsHidden,
+ IsRangable?,
+ IsTruncatable?)>
<!ELEMENT Link (Name,Menu,Description,DbTo)>
@@ -46,6 +51,7 @@ $Id: eInfo_020511.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
<!ELEMENT DbInfo (DbName,
MenuName,
Description,
+ DbBuild?,
Count,
LastUpdate,
FieldList,
View
4 Bio/Entrez/DTDs/eLink_101123.dtd
@@ -1,6 +1,6 @@
<!--
This is the Current DTD for Entrez eLink
-$Id: eLink_101123.dtd 213694 2010-11-24 20:37:47Z fialkov $
+$Id: eLink_101123.dtd 349314 2012-01-09 23:26:00Z fialkov $
-->
<!-- ================================================================= -->
@@ -82,7 +82,7 @@ $Id: eLink_101123.dtd 213694 2010-11-24 20:37:47Z fialkov $
<!-- Common -->
<!ELEMENT LinkSet (DbFrom,
- ((IdList?, (LinkSetDb* | (LinkSetDbHistory*, WebEnv))) | IdUrlList | IdCheckList | ERROR)
+ ((IdList?, ((ERROR?, LinkSetDb)* | (LinkSetDbHistory*, WebEnv))) | IdUrlList | IdCheckList | ERROR), ERROR?
)>
<!ELEMENT eLinkResult (LinkSet*, ERROR?)>
View
2  Bio/Entrez/DTDs/ePost_020511.dtd
@@ -1,6 +1,6 @@
<!--
This is the Current DTD for Entrez ePost
-$Id: ePost_020511.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
+$Id: ePost_020511.dtd 161288 2009-05-26 18:34:21Z fialkov $
-->
<!-- ================================================================= -->
View
2  Bio/Entrez/DTDs/eSearch_020511.dtd
@@ -1,6 +1,6 @@
<!--
This is the Current DTD for Entrez eSearch
-$Id: eSearch_020511.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
+$Id: eSearch_020511.dtd 85163 2006-06-28 17:35:21Z olegh $
-->
<!-- ================================================================= -->
View
2  Bio/Entrez/DTDs/eSummary_041029.dtd
@@ -1,6 +1,6 @@
<!--
This is the Current DTD for Entrez eSummary version 2
-$Id: eSummary_041029.dtd,v 1.1 2008-05-13 11:17:44 mdehoon Exp $
+$Id: eSummary_041029.dtd 49514 2004-10-29 15:52:04Z parantha $
-->
<!-- ================================================================= -->
View
2  Bio/Entrez/DTDs/egquery.dtd
@@ -1,6 +1,6 @@
<!--
This is the Current DTD for Entrez eGSearch
- $Id: egquery.dtd,v 1.1 2008-05-16 11:33:40 mdehoon Exp $
+ $Id: egquery.dtd 39250 2004-05-03 16:19:48Z yasmax $
-->
<!-- ================================================================= -->
View
2  Bio/Entrez/DTDs/nlmcommon_080101.dtd
@@ -24,7 +24,7 @@
<!-- NLMCommon.dtd
Document Type Definition for the PubMed Article DTD
- $Id: nlmcommon_080101.dtd,v 1.1 2008-05-17 02:42:42 mdehoon Exp $
+ $Id: nlmcommon_080101.dtd 114839 2007-11-30 16:19:51Z korobtch $
-->
<!-- ====================================================================== -->
<!-- Revision Notes Section
View
6 Bio/Entrez/DTDs/pubmed_080101.dtd
@@ -14,7 +14,7 @@
- "ProviderId" has been removed from PubmedData
- "URL" has been removed from PubmdeData
- $Id: pubmed_080101.dtd,v 1.1 2008-05-17 02:42:42 mdehoon Exp $
+ $Id: pubmed_080101.dtd 143882 2008-10-23 15:38:53Z korobtch $
-->
<!-- ================================================================= -->
@@ -32,12 +32,12 @@
PL|PT|PS|RO|RU|SL|SK|SQ|SR|SV|SW|TH|TR|UK|
VI|ZH)">
<!ENTITY % pub.status.int "pmc | pmcr | pubmed | pubmedr |
- premedline | medline | medliner">
+ premedline | medline | medliner | entrez">
<!ENTITY % pub.status "(received | accepted | epublish |
ppublish | revised | aheadofprint |
retracted | %pub.status.int;)">
<!ENTITY % art.id.type.int "pubmed | medline | pmcid">
-<!ENTITY % art.id.type "(doi | pii | pmcpid | pmpid |
+<!ENTITY % art.id.type "(doi | pii | pmcpid | pmpid | pmc | mid |
sici | %art.id.type.int;)">
<!-- ================================================================= -->
<!ELEMENT PubmedArticleSet (PubmedArticle)+>
View
24 Bio/Entrez/DTDs/taxon.dtd
@@ -1,7 +1,7 @@
<!-- ?xml version="1.0"? -->
<!-- DOCTYPE TaxaSet PUBLIC "-//NLM//DTD TaxaSet, 20 February 2004//EN" "taxon.dtd" -->
-<!-- $Id: taxon.dtd,v 1.1 2008-05-17 06:10:25 mdehoon Exp $ -->
+<!-- $Id: taxon.dtd 348960 2012-01-05 21:51:40Z yasmax $ -->
<!-- ELEMENTS -->
<!ELEMENT TaxId (#PCDATA)>
@@ -53,7 +53,7 @@
<!ELEMENT PropValueString (#PCDATA)>
<!-- Taxon structural entities -->
-<!ELEMENT TaxaSet ( Taxon+ )>
+<!ELEMENT TaxaSet ( Taxon* )>
<!ELEMENT Taxon (
TaxId,
@@ -80,17 +80,17 @@
GenbankAcronym?,
BlastName?,
( EquivalentName |
- Synonym |
- Acronym |
+ Synonym |
+ Acronym |
Misspelling |
- Anamorph |
- Includes |
- CommonName |
- Inpart |
- Misnomer |
- Teleomorph |
- GenbankSynonym |
- GenbankAnamorph
+ Anamorph |
+ Includes |
+ CommonName |
+ Inpart |
+ Misnomer |
+ Teleomorph |
+ GenbankSynonym |
+ GenbankAnamorph
)*,
Name*
)>
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