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updates for 1.10 release

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1 parent 975ac54 commit 7328334fb4f2472de4d834d274947f76f3bb92ac jchang committed Dec 17, 2002
Showing with 15 additions and 33 deletions.
  1. +14 −31 MANIFEST.in
  2. +1 −2 setup.py
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45 MANIFEST.in
@@ -2,47 +2,30 @@
#
# This tells distutils what files to distribute.
-# XXX need to make sure Makefile isn't distributed
-
include CONTRIB
include LICENSE
include NEWS
include README
-recursive-include Scripts *
-# add only the things we are interested in from the docs
-recursive-include Doc *.tex
+recursive-include Scripts * # Include scripts.
+recursive-include Tests * # Include regression tests.
+recursive-include Bio *.h # Include headers to compile .c files.
+recursive-include Doc *.tex # Include relevant documentation.
recursive-include Doc *.pdf
recursive-include Doc *.txt
recursive-include Doc *.py
recursive-include Doc *.html
recursive-include Doc *.fasta
+include Bio/KDTree/Makefile # Include files for building KDTree.
+include Bio/KDTree/_KDTree.i
+include Bio/KDTree/README
+include Bio/SCOP/tests/*.txt # Include files for testing SCOP.
-# csupport.h is necessary to compile several .c files...
-include Bio/csupport.h
-
-recursive-include Tests *
-global-exclude CVS
-global-exclude CVS/*
-
-# Don't include files generated by reportlab
-exclude Tests/Graphics/*.pdf
+exclude Tests/Graphics/*.pdf # Exclude test files generated by reportlab.
exclude Tests/Graphics/*.eps
+exclude Tests/Blast/bt008* # Exclude large file.
+recursive-exclude Tests/UnitTests * # Exclude unused testing framework.
-# Don't include obsolete regression testing frameworks.
-exclude Tests/br_regrtest.py
-recursive-exclude Tests/UnitTests *
-
-exclude Tests/Amino
-exclude Tests/Blast
-exclude Tests/Enzymes
-exclude Tests/Fasta
-exclude Tests/Gobase
-exclude Tests/Nucleic
-exclude Tests/Prosite
-exclude Tests/Prosite/Doc
-exclude Tests/Rebase
-exclude Tests/SwissProt
-exclude Tests/output
-exclude Tests/Blast/bt008* # file too large
-
+exclude Tests/test_locus_http.py # Exclude LocusLink, not ready (12/17/2002).
+exclude Tests/test_locuslink.py
+recursive-exclude Tests/LocusLink *
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3 setup.py
@@ -167,7 +167,6 @@ def run(self):
# standard biopython packages
biopython_packages = ['Bio',
'Bio.Ais',
- 'Bio.Ais.Examples',
'Bio.Align',
'Bio.Alphabet',
'Bio.Application',
@@ -237,7 +236,7 @@ def run(self):
'Bio.SwissProt',
'Bio.UniGene',
'Bio.writers',
- 'Bio.writers.SeqRecord'
+ 'Bio.writers.SeqRecord',
'Bio.WWW',
]

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