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1 parent 0091f30 commit cf633511e05f7df0eb0dc36dba91262945c8da67 mdehoon committed Jul 16, 2008
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21 Tests/MetaTool/Example3.txt
@@ -1,21 +0,0 @@
--ENZREV
-3.5.1.38
-
--ENZIRREV
-3.5.1.38
-4.1.1.12
-
--METINT
-L-Glutamine
-H2O
-L-glutamate
-NH3
-L-Aspartate
-L-alanine
-CO2
-
--METEXT
-
--CAT
-3.5.1.38 : L-Glutamine + H2O = L-glutamate + NH3 .
-4.1.1.12 : L-Aspartate = L-alanine + CO2 .
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45 Tests/MetaTool/Example4.txt
@@ -1,45 +0,0 @@
--ENZREV
-2.6.1.19
-3.5.1.6
-3.5.2.2
-
--ENZIRREV
-1.2.1.18
-1.4.3.6
-3.4.13.3
-3.5.1.6
-3.5.2.2
-
--METINT
-3-Oxopropanoate
-CoA
-NAD(P)+
-acetyl-CoA
-CO2
-NAD(P)H
-RCH2NH2
-O2
-RCHO
-NH3
-H2O2
-4-Aminobutanoate
-2-oxoglutarate
-succinate_semialdehyde
-L-glutamate
-Beta-alanyl-L-histidine
-beta-alanine
-L-histidine
-N-Carbamoyl-beta-alanine
-5,6-Dihydrouracil
-3-ureidopropionate
-
--METEXT
-H2O
-
--CAT
-1.2.1.18 : 3-Oxopropanoate + CoA + NAD(P)+ = acetyl-CoA + CO2 + NAD(P)H .
-1.4.3.6 : RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 .
-2.6.1.19 : 4-Aminobutanoate + 2-oxoglutarate = succinate_semialdehyde + L-glutamate .
-3.4.13.3 : Beta-alanyl-L-histidine + H2O = beta-alanine + L-histidine .
-3.5.1.6 : N-Carbamoyl-beta-alanine + H2O = beta-alanine + CO2 + NH3 .
-3.5.2.2 : 5,6-Dihydrouracil + H2O = 3-ureidopropionate .
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36 Tests/MetaTool/Example6.txt
@@ -1,36 +0,0 @@
--ENZREV
-1.2.1.5
-
--ENZIRREV
-1.11.1.7
-1.13.11.27
-1.2.1.5
-1.4.3.4
-1.4.3.6
-
--METINT
-Donor
-oxidized_donor
-4-Hydroxyphenylpyruvate
-homogentisate
-CO2
-An_aldehyde
-NAD(P)+
-an_acid
-NAD(P)H
-H+
-RCH2NH2
-RCHO
-NH3
-
--METEXT
-H2O2
-H2O
-O2
-
--CAT
-1.11.1.7 : Donor + H2O2 = oxidized_donor + 2 H2O .
-1.13.11.27 : 4-Hydroxyphenylpyruvate + O2 = homogentisate + CO2 .
-1.2.1.5 : An_aldehyde + NAD(P)+ + H2O = an_acid + NAD(P)H + H+ .
-1.4.3.4 : RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 .
-1.4.3.6 : RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 .
View
43 Tests/MetaTool/Example7.txt
@@ -1,43 +0,0 @@
--ENZREV
-5.3.3.2
-
--ENZIRREV
-1.1.1.34
-1.14.13.13
-2.5.1.10
-4.1.1.33
-5.4.99.7
-
--METINT
-(S)-3-Hydroxy-3-methylglutaryl-CoA
-(R)-mevalonate
-CoA
-Calcidiol
-O2
-calcitriol
-H2O
-Geranyl_diphosphate
-diphosphate
-trans,trans-farnesyl_diphosphate
-ATP
-(R)-5-diphosphomevalonate
-ADP
-phosphate
-CO2
-Isopentenyl_diphosphate
-dimethylallyl_diphosphate
-(S)-2,3-Epoxysqualene
-lanosterol
-
--METEXT
-NADPH
-NADP+
-isopentenyl_diphosphate
-
--CAT
-1.1.1.34 : (S)-3-Hydroxy-3-methylglutaryl-CoA + 2 NADPH = (R)-mevalonate + CoA + 2 NADP+ .
-1.14.13.13 : Calcidiol + NADPH + O2 = calcitriol + NADP+ + H2O .
-2.5.1.10 : Geranyl_diphosphate + isopentenyl_diphosphate = diphosphate + trans,trans-farnesyl_diphosphate .
-4.1.1.33 : ATP + (R)-5-diphosphomevalonate = ADP + phosphate + isopentenyl_diphosphate + CO2 .
-5.3.3.2 : Isopentenyl_diphosphate = dimethylallyl_diphosphate .
-5.4.99.7 : (S)-2,3-Epoxysqualene = lanosterol .
View
40 Tests/MetaTool/Example8.txt
@@ -1,40 +0,0 @@
--ENZREV
-1.3.1.28
-1.6.5.3
-2.7.7.58
-5.4.99.6
-
--ENZIRREV
-2.1.1.64
-6.2.1.26
-
--METINT
-2,3-Dihydro-2,3-dihydroxybenzoate
-ubiquinone
-ubiquinol
-S-Adenosyl-L-methionine
-3-demethylubiquinone-9
-S-adenosyl-L-homocysteine
-ubiquinone-9
-(2,3-dihydroxybenzoyl)adenylate
-Chorismate
-isochorismate
-o-succinylbenzoate
-CoA
-AMP
-o-succinylbenzoyl-CoA
-
--METEXT
-NAD+
-2,3-dihydroxybenzoate
-NADH
-ATP
-diphosphate
-
--CAT
-1.3.1.28 : 2,3-Dihydro-2,3-dihydroxybenzoate + NAD+ = 2,3-dihydroxybenzoate + NADH .
-1.6.5.3 : NADH + ubiquinone = NAD+ + ubiquinol .
-2.1.1.64 : S-Adenosyl-L-methionine + 3-demethylubiquinone-9 = S-adenosyl-L-homocysteine + ubiquinone-9 .
-2.7.7.58 : ATP + 2,3-dihydroxybenzoate = diphosphate + (2,3-dihydroxybenzoyl)adenylate .
-5.4.99.6 : Chorismate = isochorismate .
-6.2.1.26 : ATP + o-succinylbenzoate + CoA = AMP + diphosphate + o-succinylbenzoyl-CoA .
View
141 Tests/MetaTool/Example9.txt
@@ -1,141 +0,0 @@
--ENZREV
-1.1.1.205
-2.1.2.2
-2.1.2.3
-2.4.2.1
-2.4.2.22
-2.4.2.4
-2.4.2.7
-2.4.2.8
-2.7.1.25
-2.7.4.11
-2.7.4.3
-2.7.4.6
-2.7.4.8
-2.7.6.1
-2.7.7.6
-2.7.7.7
-2.7.7.8
-3.1.3.5
-
--ENZIRREV
-1.17.4.1
-1.6.6.8
-2.1.2.2
-2.1.2.3
-2.4.2.1
-2.4.2.14
-2.4.2.4
-2.7.1.25
-2.7.6.1
-2.7.6.5
-3.1.3.5
-3.1.4.16
-3.1.4.17
-3.1.5.1
-3.2.2.2
-3.2.2.4
-
--METINT
-Inosine_5`-phosphate
-NAD+
-xanthosine_5`-phosphate
-NADH
-Ribonucleoside_diphosphate
-reduced_thioredoxin
-2`-deoxyribonucleoside_diphosphate
-oxidized_thioredoxin
-NADPH
-guanosine_5`-phosphate
-NADP+
-inosine_5`-phosphate
-10-Formyltetrahydrofolate
-5`-phosphoribosylglycinamide
-tetrahydrofolate
-5`-phosphoribosyl-N-formylglycinamide
-5`-phosphoribosyl-5-amino-4-imidazolecarboxamide
-5`-phosphoribosyl-5-formamido-4-imidazolecarboxamide
-Purine_nucleoside
-phosphate
-purine
-alpha-D-ribose_1-phosphate
-5-Phospho-beta-D-ribosylamine
-L-glutamate
-L-glutamine
-5-phospho-alpha-D-ribose_1-diphosphate
-5-Phospho-alpha-D-ribose_1-diphosphate
-xanthine
-(9-D-ribosylxanthine)-5`-phosphate
-Thymidine
-thymine
-2-deoxy-D-ribose_1-phosphate
-Adenine
-AMP
-Hypoxanthine
-IMP
-adenylylsulfate
-3`-phosphoadenylylsulfate
-dAMP
-dADP
-nucleoside_diphosphate
-nucleoside_triphosphate
-GMP
-GDP
-D-ribose_5-phosphate
-GTP
-guanosine_3`-diphosphate_5`-triphosphate
-Nucleoside_triphosphate
-RNAn
-RNAn+1
-Deoxynucleoside_triphosphate
-DNAn
-DNAn+1
-a_nucleoside_diphosphate
-A_5`-ribonucleotide
-a_ribonucleoside
-Nucleoside_2`,3`-cyclic_phosphate
-nucleoside_3`-phosphate
-Nucleoside_3`,5`-cyclic_phosphate
-nucleoside_5`-phosphate
-dGTP
-deoxyguanosine
-triphosphate
-Inosine
-hypoxanthine
-D-ribose
-adenine
-
--METEXT
-H2O
-diphosphate
-ATP
-ADP
-
--CAT
-1.1.1.205 : Inosine_5`-phosphate + NAD+ + H2O = xanthosine_5`-phosphate + NADH .
-1.17.4.1 : Ribonucleoside_diphosphate + reduced_thioredoxin = 2`-deoxyribonucleoside_diphosphate + oxidized_thioredoxin + H2O .
-1.6.6.8 : NADPH + guanosine_5`-phosphate = NADP+ + inosine_5`-phosphate .
-2.1.2.2 : 10-Formyltetrahydrofolate + 5`-phosphoribosylglycinamide = tetrahydrofolate + 5`-phosphoribosyl-N-formylglycinamide .
-2.1.2.3 : 10-Formyltetrahydrofolate + 5`-phosphoribosyl-5-amino-4-imidazolecarboxamide = tetrahydrofolate + 5`-phosphoribosyl-5-formamido-4-imidazolecarboxamide .
-2.4.2.1 : Purine_nucleoside + phosphate = purine + alpha-D-ribose_1-phosphate .
-2.4.2.14 : 5-Phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose_1-diphosphate + H2O .
-2.4.2.22 : 5-Phospho-alpha-D-ribose_1-diphosphate + xanthine = (9-D-ribosylxanthine)-5`-phosphate + diphosphate .
-2.4.2.4 : Thymidine + phosphate = thymine + 2-deoxy-D-ribose_1-phosphate .
-2.4.2.7 : Adenine + 5-phospho-alpha-D-ribose_1-diphosphate = AMP + diphosphate .
-2.4.2.8 : Hypoxanthine + 5-phospho-alpha-D-ribose_1-diphosphate = IMP + diphosphate .
-2.7.1.25 : ATP + adenylylsulfate = ADP + 3`-phosphoadenylylsulfate .
-2.7.4.11 : ATP + dAMP = ADP + dADP .
-2.7.4.3 : ATP + AMP = ADP + ADP .
-2.7.4.6 : ATP + nucleoside_diphosphate = ADP + nucleoside_triphosphate .
-2.7.4.8 : ATP + GMP = ADP + GDP .
-2.7.6.1 : ATP + D-ribose_5-phosphate = AMP + 5-phospho-alpha-D-ribose_1-diphosphate .
-2.7.6.5 : ATP + GTP = AMP + guanosine_3`-diphosphate_5`-triphosphate .
-2.7.7.6 : Nucleoside_triphosphate + RNAn = diphosphate + RNAn+1 .
-2.7.7.7 : Deoxynucleoside_triphosphate + DNAn = diphosphate + DNAn+1 .
-2.7.7.8 : RNAn+1 + phosphate = RNAn + a_nucleoside_diphosphate .
-3.1.3.5 : A_5`-ribonucleotide + H2O = a_ribonucleoside + phosphate .
-3.1.4.16 : Nucleoside_2`,3`-cyclic_phosphate + H2O = nucleoside_3`-phosphate .
-3.1.4.17 : Nucleoside_3`,5`-cyclic_phosphate + H2O = nucleoside_5`-phosphate .
-3.1.5.1 : dGTP + H2O = deoxyguanosine + triphosphate .
-3.2.2.2 : Inosine + H2O = hypoxanthine + D-ribose .
-3.2.2.4 : AMP + H2O = adenine + D-ribose_5-phosphate .
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124 Tests/MetaTool/Meta10.out
@@ -1,124 +0,0 @@
-METATOOL OUTPUT Version 3.5 (28.03.2001) C:\METATOOL\META35~1.EXE
-
-INPUT FILE: EXAMPLE10.TXT
-
-INTERNAL METABOLITES: 5
-REACTIONS: 2
-
- 2 external L-Glutamate
- 2 external NAD+
- 2 external NADH
- 1 int L-glutamine
- 1 int oxoglutarate
- 1 int H2O
- 1 int 2-oxoglutarate
- 1 int NH3
- 8 metabolites, 11 is the summarized frequency
-
-edges frequency of nodes
- 0 0
- 1 5
- 2 3
-
-STOICHIOMETRIC MATRIX
-
- matrix dimension r5 x c2
- 0 1
- 0 2
--1 0
- 1 0
- 1 0
-The following line indicates reversible (0) and irreversible reactions (1)
- 0 1
-rows and columns are sorted as declared in the inputfile
-
-NOT BALANCED INTERNAL METABOLITES
-L-glutamine oxoglutarate H2O 2-oxoglutarate NH3
-
-KERNEL
-
- matrix dimension r0 x c2
-2 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
- - not found -
-
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-SUBSETS OF REACTIONS
-
- matrix dimension r0 x c2
-2 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
- - not found -
-
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-REDUCED SYSTEM with 5 branch point metabolites in 2 reactions (columns)
-
- matrix dimension r0 x c2
-The following line indicates reversible (0) and irreversible reactions (1)
- 0 0
-
--> Branch metabolites are :
-met cons built reactions
-
--> No branch metabolites are :
-met cons built reactions
-L-glutamine 0 1 1 i
-oxoglutarate 0 1 1 i
-H2O 1 0 1 r
-2-oxoglutarate 0 1 1 r
-NH3 0 1 1 r
-
-CONVEX BASIS
-
- matrix dimension r0 x c2
-
- enzymes
- - not found -
-
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-CONSERVATION RELATIONS
-
- matrix dimension r3 x c5
--2 1 0 0 0
- 0 0 1 1 0
- 0 0 1 0 1
- 1 : L-glutamine + oxoglutarate = const
- 2 : H2O + 2-oxoglutarate = const
- 3 : H2O + NH3 = const
-
-ELEMENTARY MODES
-
- matrix dimension r0 x c2
-2 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
- - not found -
-
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-The elementary modes ARE EQUAL to convex basis.
View
131 Tests/MetaTool/Meta12.out
@@ -1,131 +0,0 @@
-METATOOL OUTPUT Version 3.5 (28.03.2001) C:\METATOOL\META35~1.EXE
-
-INPUT FILE: EXAMPLE12.TXT
-
-INTERNAL METABOLITES: 6
-REACTIONS: 3
-
- 2 external dehydroascorbate
- 1 int L-Ascorbate
- 1 int H2O2
- 1 int H2O
- 1 int Glutathione
- 1 int oxidized_glutathione
- 1 int ascorbate
- 7 metabolites, 8 is the summarized frequency
-
-edges frequency of nodes
- 0 0
- 1 6
- 2 1
-
-STOICHIOMETRIC MATRIX
-
- matrix dimension r6 x c3
- 0 -1 0
- 0 -1 0
- 0 2 0
--2 0 0
- 1 0 0
- 1 0 0
-The following line indicates reversible (0) and irreversible reactions (1)
- 0 1 1
-rows and columns are sorted as declared in the inputfile
-
-NOT BALANCED INTERNAL METABOLITES
-L-Ascorbate H2O2 H2O Glutathione oxidized_glutathione ascorbate
-
-KERNEL
-
- matrix dimension r1 x c3
- 0 0 1
-3 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 1.8.5.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-SUBSETS OF REACTIONS
-
- matrix dimension r1 x c3
- 0 0 1
-3 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 1.8.5.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-REDUCED SYSTEM with 6 branch point metabolites in 1 reactions (columns)
-
- matrix dimension r0 x c1
-The following line indicates reversible (0) and irreversible reactions (1)
- 1
-
--> Branch metabolites are :
-met cons built reactions
-
--> No branch metabolites are :
-met cons built reactions
-L-Ascorbate 1 0 1 i
-H2O2 1 0 1 i
-H2O 0 1 1 i
-Glutathione 1 0 1 r
-oxidized_glutathione 0 1 1 r
-ascorbate 0 1 1 r
-
-CONVEX BASIS
-
- matrix dimension r1 x c3
- 0 0 1
-
- enzymes
-
- 1: 1.8.5.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-CONSERVATION RELATIONS
-
- matrix dimension r4 x c6
- 1 -1 0 0 0 0
- 2 0 1 0 0 0
- 0 0 0 1 2 0
- 0 0 0 1 0 2
- 1 : L-Ascorbate + H2O2 = const
- 2 : L-Ascorbate + H2O = const
- 3 : Glutathione + oxidized_glutathione = const
- 4 : Glutathione + ascorbate = const
-
-ELEMENTARY MODES
-
- matrix dimension r1 x c3
- 0 0 1
-3 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 1.8.5.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-The elementary modes ARE EQUAL to convex basis.
View
191 Tests/MetaTool/Meta13.out
@@ -1,191 +0,0 @@
-METATOOL OUTPUT Version 3.5 (28.03.2001) C:\METATOOL\META35~1.EXE
-
-INPUT FILE: EXAMPLE13.TXT
-
-INTERNAL METABOLITES: 19
-REACTIONS: 6
-
- 3 external H2O
- 1 int 5,10-Methylenetetrahydrofolate
- 1 int glycine
- 1 int tetrahydrofolate
- 1 int L-serine
- 1 int (5-L-Glutamyl)-peptide
- 1 int an_amino_acid
- 1 int peptide
- 1 int 5-L-glutamyl_amino_acid
- 1 int beta-D-oligosaccarides
- 1 int n_D-glucose
- 1 int L-Asparagine
- 1 int L-aspartate
- 1 int NH3
- 1 int ATP
- 1 int L-Asp
- 1 int NH4+
- 1 int AMP
- 1 int diphosphate
- 1 int L-Asn
- 20 metabolites, 22 is the summarized frequency
-
-edges frequency of nodes
- 0 0
- 1 19
- 2 0
- 3 1
-
-STOICHIOMETRIC MATRIX
-
- matrix dimension r19 x c6
--1 0 0 0 0 0
--1 0 0 0 0 0
- 1 0 0 0 0 0
- 1 0 0 0 0 0
- 0 0 -1 0 0 0
- 0 0 -1 0 0 0
- 0 0 1 0 0 0
- 0 0 1 0 0 0
- 0 0 0 -1 0 0
- 0 0 0 1 0 0
- 0 0 0 0 -1 0
- 0 0 0 0 1 0
- 0 0 0 0 1 0
- 0 0 0 0 0 -1
- 0 0 0 0 0 -1
- 0 0 0 0 0 -1
- 0 0 0 0 0 1
- 0 0 0 0 0 1
- 0 0 0 0 0 1
-The following line indicates reversible (0) and irreversible reactions (1)
- 0 1 1 1 1 1
-rows and columns are sorted as declared in the inputfile
-
-NOT BALANCED INTERNAL METABOLITES
-5,10-Methylenetetrahydrofolate glycine tetrahydrofolate L-serine (5-L-Glutamyl)-peptide an_amino_acid peptide 5-L-glutamyl_amino_acid beta-D-oligosaccarides n_D-glucose L-Asparagine L-aspartate NH3 ATP L-Asp NH4+ AMP diphosphate L-Asn
-
-KERNEL
-
- matrix dimension r1 x c6
- 0 1 0 0 0 0
-6 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 2.1.2.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-SUBSETS OF REACTIONS
-
- matrix dimension r1 x c6
- 0 1 0 0 0 0
-6 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 2.1.2.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-REDUCED SYSTEM with 19 branch point metabolites in 1 reactions (columns)
-
- matrix dimension r0 x c1
-The following line indicates reversible (0) and irreversible reactions (1)
- 1
-
--> Branch metabolites are :
-met cons built reactions
-
--> No branch metabolites are :
-met cons built reactions
-5,10-Methylenetetrahydrofolate 1 0 1 r
-glycine 1 0 1 r
-tetrahydrofolate 0 1 1 r
-L-serine 0 1 1 r
-(5-L-Glutamyl)-peptide 1 0 1 i
-an_amino_acid 1 0 1 i
-peptide 0 1 1 i
-5-L-glutamyl_amino_acid 0 1 1 i
-beta-D-oligosaccarides 1 0 1 i
-n_D-glucose 0 1 1 i
-L-Asparagine 1 0 1 i
-L-aspartate 0 1 1 i
-NH3 0 1 1 i
-ATP 1 0 1 i
-L-Asp 1 0 1 i
-NH4+ 1 0 1 i
-AMP 0 1 1 i
-diphosphate 0 1 1 i
-L-Asn 0 1 1 i
-
-CONVEX BASIS
-
- matrix dimension r1 x c6
- 0 1 0 0 0 0
-
- enzymes
-
- 1: 2.1.2.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-CONSERVATION RELATIONS
-
- matrix dimension r14 x c19
- 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 -1 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
- 1 : 5,10-Methylenetetrahydrofolate + glycine = const
- 2 : 5,10-Methylenetetrahydrofolate + tetrahydrofolate = const
- 3 : 5,10-Methylenetetrahydrofolate + L-serine = const
- 4 : (5-L-Glutamyl)-peptide + an_amino_acid = const
- 5 : (5-L-Glutamyl)-peptide + peptide = const
- 6 : (5-L-Glutamyl)-peptide + 5-L-glutamyl_amino_acid = const
- 7 : beta-D-oligosaccarides + n_D-glucose = const
- 8 : L-Asparagine + L-aspartate = const
- 9 : L-Asparagine + NH3 = const
-10 : ATP + L-Asp = const
-11 : ATP + NH4+ = const
-12 : ATP + AMP = const
-13 : ATP + diphosphate = const
-14 : ATP + L-Asn = const
-
-ELEMENTARY MODES
-
- matrix dimension r1 x c6
- 0 1 0 0 0 0
-6 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 2.1.2.1 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-The elementary modes ARE EQUAL to convex basis.
View
162 Tests/MetaTool/Meta14.out
@@ -1,162 +0,0 @@
-METATOOL OUTPUT Version 3.5 (28.03.2001) C:\METATOOL\META35~1.EXE
-
-INPUT FILE: EXAMPLE14.TXT
-
-INTERNAL METABOLITES: 13
-REACTIONS: 5
-
- 2 external H2O
- 1 int 5,6,7,8-Tetrahydrofolate
- 1 int NADP+
- 1 int 7,8-dihydrofolate
- 1 int NADPH
- 1 int An_orthophosphoric_monoester
- 1 int an_alcohol
- 1 int phosphate
- 1 int GTP
- 1 int formate
- 1 int 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine_triphosphate
- 1 int 6-(L-erythro-1,2-Dihydroxypropyl_3-triphosphate)-7,8-dihydropterin
- 1 int 6-(1,2-dioxopropyl)-5,6,7,8-tetrahydropterin
- 1 int triphosphate
- 14 metabolites, 15 is the summarized frequency
-
-edges frequency of nodes
- 0 0
- 1 13
- 2 1
-
-STOICHIOMETRIC MATRIX
-
- matrix dimension r13 x c5
--1 0 0 0 0
--1 0 0 0 0
- 1 0 0 0 0
- 1 0 0 0 0
- 0 0 -1 0 0
- 0 0 1 0 0
- 0 0 1 0 0
- 0 0 0 -1 0
- 0 0 0 1 0
- 0 0 0 1 0
- 0 0 0 0 -1
- 0 0 0 0 1
- 0 0 0 0 1
-The following line indicates reversible (0) and irreversible reactions (1)
- 0 1 1 1 1
-rows and columns are sorted as declared in the inputfile
-
-NOT BALANCED INTERNAL METABOLITES
-5,6,7,8-Tetrahydrofolate NADP+ 7,8-dihydrofolate NADPH An_orthophosphoric_monoester an_alcohol phosphate GTP formate 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine_triphosphate 6-(L-erythro-1,2-Dihydroxypropyl_3-triphosphate)-7,8-dihydropterin 6-(1,2-dioxopropyl)-5,6,7,8-tetrahydropterin triphosphate
-
-KERNEL
-
- matrix dimension r1 x c5
- 0 1 0 0 0
-5 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 1.5.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-SUBSETS OF REACTIONS
-
- matrix dimension r1 x c5
- 0 1 0 0 0
-5 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 1.5.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-REDUCED SYSTEM with 13 branch point metabolites in 1 reactions (columns)
-
- matrix dimension r0 x c1
-The following line indicates reversible (0) and irreversible reactions (1)
- 1
-
--> Branch metabolites are :
-met cons built reactions
-
--> No branch metabolites are :
-met cons built reactions
-5,6,7,8-Tetrahydrofolate 1 0 1 r
-NADP+ 1 0 1 r
-7,8-dihydrofolate 0 1 1 r
-NADPH 0 1 1 r
-An_orthophosphoric_monoester 1 0 1 i
-an_alcohol 0 1 1 i
-phosphate 0 1 1 i
-GTP 1 0 1 i
-formate 0 1 1 i
-2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine_triphosphate 0 1 1 i
-6-(L-erythro-1,2-Dihydroxypropyl_3-triphosphate)-7,8-dihydropterin 1 0 1 i
-6-(1,2-dioxopropyl)-5,6,7,8-tetrahydropterin 0 1 1 i
-triphosphate 0 1 1 i
-
-CONVEX BASIS
-
- matrix dimension r1 x c5
- 0 1 0 0 0
-
- enzymes
-
- 1: 1.5.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-CONSERVATION RELATIONS
-
- matrix dimension r9 x c13
- 1 -1 0 0 0 0 0 0 0 0 0 0 0
- 1 0 1 0 0 0 0 0 0 0 0 0 0
- 1 0 0 1 0 0 0 0 0 0 0 0 0
- 0 0 0 0 1 1 0 0 0 0 0 0 0
- 0 0 0 0 1 0 1 0 0 0 0 0 0
- 0 0 0 0 0 0 0 1 1 0 0 0 0
- 0 0 0 0 0 0 0 1 0 1 0 0 0
- 0 0 0 0 0 0 0 0 0 0 1 1 0
- 0 0 0 0 0 0 0 0 0 0 1 0 1
- 1 : 5,6,7,8-Tetrahydrofolate + NADP+ = const
- 2 : 5,6,7,8-Tetrahydrofolate + 7,8-dihydrofolate = const
- 3 : 5,6,7,8-Tetrahydrofolate + NADPH = const
- 4 : An_orthophosphoric_monoester + an_alcohol = const
- 5 : An_orthophosphoric_monoester + phosphate = const
- 6 : GTP + formate = const
- 7 : GTP + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine_triphosphate = const
- 8 : 6-(L-erythro-1,2-Dihydroxypropyl_3-triphosphate)-7,8-dihydropterin + 6-(1,2-dioxopropyl)-5,6,7,8-tetrahydropterin = const
- 9 : 6-(L-erythro-1,2-Dihydroxypropyl_3-triphosphate)-7,8-dihydropterin + triphosphate = const
-
-ELEMENTARY MODES
-
- matrix dimension r1 x c5
- 0 1 0 0 0
-5 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 1.5.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-The elementary modes ARE EQUAL to convex basis.
View
227 Tests/MetaTool/Meta15.out
@@ -1,227 +0,0 @@
-METATOOL OUTPUT Version 3.5 (28.03.2001) C:\METATOOL\META35~1.EXE
-
-INPUT FILE: EXAMPLE15.TXT
-
-INTERNAL METABOLITES: 26
-REACTIONS: 11
-
- 4 external H2O
- 2 int NH3
- 2 int S-Adenosyl-L-methionine
- 2 int S-adenosyl-L-homocysteine
- 2 int N-formimino-L-glutamate
- 1 int RCH2NH2
- 1 int O2
- 1 int RCHO
- 1 int H2O2
- 1 int carnosine
- 1 int anserine
- 1 int histamine
- 1 int Ntau-methylhistamine
- 1 int 5-Formiminotetrahydrofolate
- 1 int L-glutamate
- 1 int tetrahydrofolate
- 1 int N-Acetyl-L-aspartate
- 1 int a_fatty_acid_anion
- 1 int L-aspartate
- 1 int 4-Imidazolone-5-propanoate
- 1 int L-Tryptophan
- 1 int tryptamine
- 1 int CO2
- 1 int Urocanate
- 1 int 4,5-dihydro-4-oxo-5-imidazolepropanoate
- 1 int L-Histidine
- 1 int urocanate
- 27 metabolites, 34 is the summarized frequency
-
-edges frequency of nodes
- 0 0
- 1 22
- 2 4
- 3 0
- 4 1
-
-STOICHIOMETRIC MATRIX
-
- matrix dimension r26 x c11
- 0 0 -1 0 0 0 0 0 0 0 0
- 0 0 -1 0 0 0 0 0 0 0 0
- 0 0 1 0 0 0 0 0 0 0 0
- 0 1 1 0 0 0 0 0 0 0 0
- 0 0 1 0 0 0 0 0 0 0 0
- 0 0 0 -1 -1 0 0 0 0 0 0
- 0 0 0 -1 0 0 0 0 0 0 0
- 0 0 0 1 1 0 0 0 0 0 0
- 0 0 0 1 0 0 0 0 0 0 0
- 0 0 0 0 -1 0 0 0 0 0 0
- 0 0 0 0 1 0 0 0 0 0 0
--1 0 0 0 0 0 0 0 0 0 0
--1 0 0 0 0 0 0 0 0 0 0
- 1 0 0 0 0 0 0 0 0 0 0
- 1 0 0 0 0 0 0 1 0 0 0
- 0 0 0 0 0 0 -1 0 0 0 0
- 0 0 0 0 0 0 1 0 0 0 0
- 0 0 0 0 0 0 1 0 0 0 0
- 0 0 0 0 0 0 0 -1 0 0 0
- 0 0 0 0 0 0 0 0 -1 0 0
- 0 0 0 0 0 0 0 0 1 0 0
- 0 0 0 0 0 0 0 0 1 0 0
- 0 0 0 0 0 0 0 0 0 -1 0
- 0 0 0 0 0 0 0 0 0 1 0
- 0 -1 0 0 0 0 0 0 0 0 0
- 0 1 0 0 0 0 0 0 0 0 0
-The following line indicates reversible (0) and irreversible reactions (1)
- 0 0 1 1 1 1 1 1 1 1 1
-rows and columns are sorted as declared in the inputfile
-
-NOT BALANCED INTERNAL METABOLITES
-RCH2NH2 O2 RCHO H2O2 carnosine anserine histamine Ntau-methylhistamine 5-Formiminotetrahydrofolate L-glutamate tetrahydrofolate N-Acetyl-L-aspartate a_fatty_acid_anion L-aspartate 4-Imidazolone-5-propanoate L-Tryptophan tryptamine CO2 Urocanate 4,5-dihydro-4-oxo-5-imidazolepropanoate L-Histidine urocanate
-
-KERNEL
-
- matrix dimension r2 x c11
- 0 0 0 0 0 1 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 1
-11 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 2.1.2.5 irreversible
- 2: 4.3.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-SUBSETS OF REACTIONS
-
- matrix dimension r2 x c11
- 0 0 0 0 0 1 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 1
-11 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 2.1.2.5 irreversible
- 2: 4.3.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-REDUCED SYSTEM with 26 branch point metabolites in 2 reactions (columns)
-
- matrix dimension r0 x c2
-The following line indicates reversible (0) and irreversible reactions (1)
- 1 1
-
--> Branch metabolites are :
-met cons built reactions
-
--> No branch metabolites are :
-met cons built reactions
-RCH2NH2 1 0 1 i
-O2 1 0 1 i
-RCHO 0 1 1 i
-NH3 0 2 2 ir
-H2O2 0 1 1 i
-S-Adenosyl-L-methionine 2 0 2 ii
-carnosine 1 0 1 i
-S-adenosyl-L-homocysteine 0 2 2 ii
-anserine 0 1 1 i
-histamine 1 0 1 i
-Ntau-methylhistamine 0 1 1 i
-5-Formiminotetrahydrofolate 1 0 1 r
-L-glutamate 1 0 1 r
-tetrahydrofolate 0 1 1 r
-N-formimino-L-glutamate 0 2 2 ri
-N-Acetyl-L-aspartate 1 0 1 i
-a_fatty_acid_anion 0 1 1 i
-L-aspartate 0 1 1 i
-4-Imidazolone-5-propanoate 1 0 1 i
-L-Tryptophan 1 0 1 i
-tryptamine 0 1 1 i
-CO2 0 1 1 i
-Urocanate 1 0 1 i
-4,5-dihydro-4-oxo-5-imidazolepropanoate 0 1 1 i
-L-Histidine 1 0 1 r
-urocanate 0 1 1 r
-
-CONVEX BASIS
-
- matrix dimension r2 x c11
- 0 0 0 0 0 1 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 1
-
- enzymes
-
- 1: 2.1.2.5 irreversible
- 2: 4.3.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-CONSERVATION RELATIONS
-
- matrix dimension r17 x c26
- 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 -1 1 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
- 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
- 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1
- 1 : RCH2NH2 + O2 = const
- 2 : RCH2NH2 + RCHO = const
- 3 : RCH2NH2 + H2O2 = const
- 4 : S-Adenosyl-L-methionine + S-adenosyl-L-homocysteine = const
- 5 : carnosine + anserine = const
- 6 : S-Adenosyl-L-methionine + carnosine + histamine = const
- 7 : S-Adenosyl-L-methionine + carnosine + Ntau-methylhistamine = const
- 8 : 5-Formiminotetrahydrofolate + L-glutamate = const
- 9 : 5-Formiminotetrahydrofolate + tetrahydrofolate = const
-10 : N-Acetyl-L-aspartate + a_fatty_acid_anion = const
-11 : N-Acetyl-L-aspartate + L-aspartate = const
-12 : 5-Formiminotetrahydrofolate + N-formimino-L-glutamate + 4-Imidazolone-5-propanoate = const
-13 : L-Tryptophan + tryptamine = const
-14 : L-Tryptophan + CO2 = const
-15 : Urocanate + 4,5-dihydro-4-oxo-5-imidazolepropanoate = const
-16 : RCH2NH2 + NH3 + L-Histidine = const
-17 : RCH2NH2 + NH3 + urocanate = const
-
-ELEMENTARY MODES
-
- matrix dimension r2 x c11
- 0 0 0 0 0 1 0 0 0 0 0
- 0 0 0 0 0 0 0 0 0 0 1
-11 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section.
-
- enzymes
-
- 1: 2.1.2.5 irreversible
- 2: 4.3.1.3 irreversible
-
- overall reaction
- - not found -
-
-
-The remaining overall reactions perform no net transformation of external metabolites.
-
-The elementary modes ARE EQUAL to convex basis.
View
29 Tests/MetaTool/example11.txt
@@ -1,29 +0,0 @@
--ENZREV
-2.6.1.1
-
--ENZIRREV
-1.14.18.1
-2.6.1.1
-
--METINT
-o-Diphenol
-o-quinone
-L-Tyrosine
-dopaquinone
-Monophenol
-o-diphenol
-L-Aspartate
-2-oxoglutarate
-oxaloacetate
-L-glutamate
-
--METEXT
-O2
-H2O
-L-dopa
-
--CAT
-1.14.18.1 : 2 o-Diphenol + O2 = 2 o-quinone + 2 H2O .
-1.14.18.1 : L-Tyrosine + L-dopa + O2 = L-dopa + dopaquinone + H2O .
-1.14.18.1 : Monophenol + O2 = o-diphenol + H2O .
-2.6.1.1 : L-Aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate
View
21 Tests/MetaTool/example12.txt
@@ -1,21 +0,0 @@
--ENZREV
-1.8.5.1
-
--ENZIRREV
-1.11.1.11
-1.8.5.1
-
--METINT
-L-Ascorbate
-H2O2
-H2O
-Glutathione
-oxidized_glutathione
-ascorbate
-
--METEXT
-dehydroascorbate
-
--CAT
-1.11.1.11 : L-Ascorbate + H2O2 = dehydroascorbate + 2 H2O .
-1.8.5.1 : 2 Glutathione + dehydroascorbate = oxidized_glutathione + ascorbate .
View
40 Tests/MetaTool/example13.txt
@@ -1,40 +0,0 @@
--ENZREV
-2.1.2.1
-
--ENZIRREV
-2.1.2.1
-2.3.2.2
-3.2.1.21
-3.5.1.1
-6.3.1.1
-
--METINT
-5,10-Methylenetetrahydrofolate
-glycine
-tetrahydrofolate
-L-serine
-(5-L-Glutamyl)-peptide
-an_amino_acid
-peptide
-5-L-glutamyl_amino_acid
-beta-D-oligosaccarides
-n_D-glucose
-L-Asparagine
-L-aspartate
-NH3
-ATP
-L-Asp
-NH4+
-AMP
-diphosphate
-L-Asn
-
--METEXT
-H2O
-
--CAT
-2.1.2.1 : 5,10-Methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine .
-2.3.2.2 : (5-L-Glutamyl)-peptide + an_amino_acid = peptide + 5-L-glutamyl_amino_acid .
-3.2.1.21 : beta-D-oligosaccarides + H2O = n_D-glucose .
-3.5.1.1 : L-Asparagine + H2O = L-aspartate + NH3 .
-6.3.1.1 : ATP + L-Asp + NH4+ = AMP + diphosphate + L-Asn .
View
32 Tests/MetaTool/example14.txt
@@ -1,32 +0,0 @@
--ENZREV
-1.5.1.3
-
--ENZIRREV
-1.5.1.3
-3.1.3.1
-3.5.4.16
-4.6.1.10
-
--METINT
-5,6,7,8-Tetrahydrofolate
-NADP+
-7,8-dihydrofolate
-NADPH
-An_orthophosphoric_monoester
-an_alcohol
-phosphate
-GTP
-formate
-2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine_triphosphate
-6-(L-erythro-1,2-Dihydroxypropyl_3-triphosphate)-7,8-dihydropterin
-6-(1,2-dioxopropyl)-5,6,7,8-tetrahydropterin
-triphosphate
-
--METEXT
-H2O
-
--CAT
-1.5.1.3 : 5,6,7,8-Tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH .
-3.1.3.1 : An_orthophosphoric_monoester + H2O = an_alcohol + phosphate .
-3.5.4.16 : GTP + 2 H2O = formate + 2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine_triphosphate .
-4.6.1.10 : 6-(L-erythro-1,2-Dihydroxypropyl_3-triphosphate)-7,8-dihydropterin = 6-(1,2-dioxopropyl)-5,6,7,8-tetrahydropterin + triphosphate .
View
56 Tests/MetaTool/example15.txt
@@ -1,56 +0,0 @@
--ENZREV
-2.1.2.5
-4.3.1.3
-
--ENZIRREV
-1.4.3.6
-2.1.1.22
-2.1.1.8
-2.1.2.5
-3.5.1.15
-3.5.2.7
-4.1.1.28
-4.2.1.49
-4.3.1.3
-
--METINT
-RCH2NH2
-O2
-RCHO
-NH3
-H2O2
-S-Adenosyl-L-methionine
-carnosine
-S-adenosyl-L-homocysteine
-anserine
-histamine
-Ntau-methylhistamine
-5-Formiminotetrahydrofolate
-L-glutamate
-tetrahydrofolate
-N-formimino-L-glutamate
-N-Acetyl-L-aspartate
-a_fatty_acid_anion
-L-aspartate
-4-Imidazolone-5-propanoate
-L-Tryptophan
-tryptamine
-CO2
-Urocanate
-4,5-dihydro-4-oxo-5-imidazolepropanoate
-L-Histidine
-urocanate
-
--METEXT
-H2O
-
--CAT
-1.4.3.6 : RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 .
-2.1.1.22 : S-Adenosyl-L-methionine + carnosine = S-adenosyl-L-homocysteine + anserine .
-2.1.1.8 : S-Adenosyl-L-methionine + histamine = S-adenosyl-L-homocysteine + Ntau-methylhistamine .
-2.1.2.5 : 5-Formiminotetrahydrofolate + L-glutamate = tetrahydrofolate + N-formimino-L-glutamate .
-3.5.1.15 : N-Acetyl-L-aspartate + H2O = a_fatty_acid_anion + L-aspartate .
-3.5.2.7 : 4-Imidazolone-5-propanoate + H2O = N-formimino-L-glutamate .
-4.1.1.28 : L-Tryptophan = tryptamine + CO2 .
-4.2.1.49 : Urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate .
-4.3.1.3 : L-Histidine = urocanate + NH3 .
View
30 Tests/MetaTool/example2.txt
@@ -1,30 +0,0 @@
--ENZREV
-Pgi Ald Tpi Rpi Rpe TktI TktII Tal Gpm Eno Pgl
--ENZIRREV
-Pfk Fbp Zwf Gnd Pgk Pyk Gap Prs_DeoB
--METINT
-E4P S7P X5P Ru5P GO6P GL6P
-DHAP FDP F6P GAP D13PG P3G P2G PEP R5P
--METEXT
-CO2 ATP ADP NAD NADH NADP NADPH
-G6P PYR R5Pex Pi
--CAT
-Pgi : G6P = F6P .
-Pfk : F6P + ATP = FDP + ADP .
-Fbp : FDP = F6P + Pi .
-Ald : FDP = DHAP + GAP .
-Tpi : DHAP = GAP .
-Gap : GAP + NAD + Pi = D13PG + NADH .
-Zwf : G6P + NADP = GO6P + NADPH .
-Pgl : GO6P = GL6P .
-Gnd : GL6P + NADP = Ru5P + NADPH + CO2 .
-Rpi : Ru5P = R5P .
-Rpe : Ru5P = X5P .
-TktI : X5P + R5P = GAP + S7P .
-TktII : E4P + X5P = F6P + GAP .
-Tal : S7P + GAP = E4P + F6P .
-Pgk : D13PG + ADP = P3G + ATP .
-Gpm : P3G = P2G .
-Eno : P2G = PEP .
-Pyk : PEP + ADP = PYR + ATP .
-Prs_DeoB : R5P = R5Pex .

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