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Include BWA in doctests (currently broken)

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1 parent ea6a55f commit d896509bbf980c0e60d0b31966ca2b7f4b896bd8 @peterjc peterjc committed Apr 11, 2013
Showing with 4 additions and 2 deletions.
  1. +3 −2 Bio/Sequencing/Applications/__init__.py
  2. +1 −0 Tests/run_tests.py
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5 Bio/Sequencing/Applications/__init__.py
@@ -1,11 +1,12 @@
"""Main entry point for application command line wrappers related to sequencing.
"""
from _Novoalign import NovoalignCommandline
-from _bwa import BwaIndexCommandline,BwaAlignCommandline,BwaSamseCommandline,BwaSampeCommandline,BwaBwaswCommandline
+from _bwa import BwaIndexCommandline, BwaAlignCommandline, BwaSamseCommandline
+from _bwa import BwaSampeCommandline, BwaBwaswCommandline
#Make this explicit, then they show up in the API docs
__all__ = ["BwaIndexCommandline",
"BwaAlignCommandline",
"BwaSamseCommandline",
"BwaSampeCommandline",
- "BwaBwaswCommandline"
+ "BwaBwaswCommandline",
]
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1 Tests/run_tests.py
@@ -114,6 +114,7 @@ def is_numpy():
"Bio.SeqUtils",
"Bio.SeqUtils.MeltingTemp",
"Bio.Sequencing.Applications._Novoalign",
+ "Bio.Sequencing.Applications._bwa",
"Bio.Wise",
"Bio.Wise.psw",
]

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