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Include BWA in doctests (currently broken)

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commit d896509bbf980c0e60d0b31966ca2b7f4b896bd8 1 parent ea6a55f
Peter Cock peterjc authored
Showing with 4 additions and 2 deletions.
  1. +3 −2 Bio/Sequencing/Applications/
  2. +1 −0  Tests/
5 Bio/Sequencing/Applications/
@@ -1,11 +1,12 @@
"""Main entry point for application command line wrappers related to sequencing.
from _Novoalign import NovoalignCommandline
-from _bwa import BwaIndexCommandline,BwaAlignCommandline,BwaSamseCommandline,BwaSampeCommandline,BwaBwaswCommandline
+from _bwa import BwaIndexCommandline, BwaAlignCommandline, BwaSamseCommandline
+from _bwa import BwaSampeCommandline, BwaBwaswCommandline
#Make this explicit, then they show up in the API docs
__all__ = ["BwaIndexCommandline",
- "BwaBwaswCommandline"
+ "BwaBwaswCommandline",
1  Tests/
@@ -114,6 +114,7 @@ def is_numpy():
+ "Bio.Sequencing.Applications._bwa",
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