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Fix doctest helper function
The idea of the helper function is to allow you to edit any module, for example Bio/Align/__init__.py, and then run its doctests in situ. This should work from the Biopython root, Bio, Bio/Align, Bio/Tests/, etc. The old code was wrongly defaulting to the __file__ value of the Bio/_utilts.py but that could give you the location of an installed Biopython. This now defaults to the current directory.
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