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Finished removing Martel and modules dependent on it.

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1 parent 56321cf commit f91db858ec7ca7e9bef679f65ddcf85c6ffddc98 @peterjc peterjc committed Apr 27, 2009
Showing with 11 additions and 6 deletions.
  1. +3 −1 DEPRECATED
  2. +8 −0 NEWS
  3. +0 −5 setup.py
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@@ -75,7 +75,9 @@ Deprecated in Release 1.49, as the website this parsed has been redesigned.
Martel
======
-Declared obsolete in Release 1.48, deprecated in Release 1.49.
+Declared obsolete in Release 1.48, deprecated in Release 1.49, and removed
+in Release 1.51. The source code for Martel is still in our repository if
+anyone wanted to develop this outside of Biopython.
Bio.Mindy and associated modules.
=================================
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8 NEWS
@@ -9,6 +9,14 @@ The latest news is at the top.
===================================================================
+Our deprecated parsing infrastructure (Martel and Bio.Mindy) which had been
+removed. This means Biopython no longer has any dependance on mxTextTools.
+
+A few cosmetic issues in GenomeDiagram with arrow sigils on circular diagrams
+have been fixed.
+
+===================================================================
+
April 20, 2008: Biopython 1.50 released.
See the notes below for the Biopython 1.50 beta release for more details,
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@@ -262,7 +262,6 @@ def is_Numpy_installed():
'Bio.Graphics',
'Bio.Graphics.GenomeDiagram',
'Bio.HMM',
- 'Bio.IntelliGenetics',
'Bio.InterPro',
'Bio.KEGG',
'Bio.KEGG.Compound',
@@ -273,8 +272,6 @@ def is_Numpy_installed():
'Bio.Motif',
'Bio.Motif.Parsers',
#'Bio.Motif.Applications', #New, deliberately left out for Biopython 1.50
- 'Bio.MetaTool',
- 'Bio.NBRF',
'Bio.Ndb',
'Bio.NeuralNetwork',
'Bio.NeuralNetwork.BackPropagation',
@@ -294,7 +291,6 @@ def is_Numpy_installed():
'Bio.Prosite',
'Bio.Restriction',
'Bio.Restriction._Update',
- 'Bio.Saf',
'Bio.SCOP',
'Bio.SeqIO',
'Bio.SeqUtils',
@@ -308,7 +304,6 @@ def is_Numpy_installed():
'Bio.WWW',
#Other top level packages,
'BioSQL',
- 'Martel', #Deprecated as of Biopython 1.49
]
# packages that require Numeric Python

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