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Update an assert() for ClustalOmega 1.1.0.

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1 parent 2028ddd commit ff5865e8ca0488776edc00249546c59c50168e5e @cbrueffer cbrueffer committed with peterjc Nov 21, 2012
Showing with 2 additions and 1 deletion.
  1. +2 −1 Tests/test_ClustalOmega_tool.py
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3 Tests/test_ClustalOmega_tool.py
@@ -142,7 +142,8 @@
#assert output, "No output from: %s\n%s" % (cline, error)
assert not output or output.strip().startswith("CLUSTAL"), output
assert error.strip() == "" or \
- error.startswith("WARNING: Sequence type is DNA."), error
+ error.startswith("WARNING: Sequence type is DNA.") or \
+ error.startswith("WARNING: DNA alignment is still experimental."), error
#Check the output...
align = AlignIO.read(output_file, "clustal")
#The length of the alignment will depend on the version of clustalw

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