Removing deprecated stuff for release 1.46.

biopython · Jun 28, 2008 · fffac27 · fffac27
1 parent 37faa7c
commit fffac27
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 9 deletions.
diff --git a/Bio/GFF/__init__.py b/Bio/GFF/__init__.py
@@ -19,7 +19,7 @@
 
 """
 
-__version__ = "$Revision: 1.7 $"
+__version__ = "$Revision: 1.8 $"
 # $Source: /home/bartek/cvs2bzr/biopython_fastimport/cvs_repo/biopython/Bio/GFF/__init__.py,v $
 
 import exceptions
@@ -137,9 +137,10 @@ class Feature(object):
     Seq('AATAAA', Alphabet())
     >>> print feature.location()
     NC_001802x.fna:73..78
-    >>> from Bio.SeqIO.FASTA import FastaWriter
-    >>> writer = FastaWriter(sys.stdout)
-    >>> writer.write(feature.record())
+    >>> from Bio import SeqIO
+    >>> record = feature.record()
+    >>> records = [record]
+    >>> SeqIO.write(records, sys.stdout, 'fasta')
     > NC_001802x.fna:73..78
     AATAAA
     >>> feature2 = Feature(location=easy.LocationFromString("NC_001802x.fna:73..78"))

diff --git a/Bio/GFF/easy.py b/Bio/GFF/easy.py
@@ -11,7 +11,7 @@
 
 from __future__ import generators # requires Python 2.2
 
-__version__ = "$Revision: 1.8 $"
+__version__ = "$Revision: 1.9 $"
 # $Source: /home/bartek/cvs2bzr/biopython_fastimport/cvs_repo/biopython/Bio/GFF/easy.py,v $
 
 import copy
@@ -24,11 +24,7 @@
 from Bio.Data import IUPACData
 from Bio.Seq import Seq
 
-#from Bio.SeqIO.FASTA import FastaReader, FastaWriter
-#The whole of Bio.SeqIO.FASTA has been deprecated, so
-#we'll use the new Bio.SeqIO functions instead:
 from Bio import SeqIO
-
 from Bio import SeqUtils
 
 import GenericTools