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Commits on May 26, 2017
  1. Restriction: Bugfixes (CommOnly, non-palindromic enzymes), more tests

    MarkusPiotrowski committed with peterjc May 23, 2017
  2. Thank Michiel for Bio.Cluster test case

    See preceeding commits from pull request #1216.
    peterjc committed May 24, 2017
  3. cyano.txt sample file for Bio.Cluster documentation.

    Files as distributed in C Clustering Library version 1.52a
    http://bonsai.hgc.jp/~mdehoon/software/cluster/cluster-1.52a.tar.gz
    mdehoon committed with peterjc May 5, 2017
  4. Include flake8-blind-except in CONTRIBUTING.rst

    See preceeding commits from pull request #1253.
    peterjc committed May 26, 2017
  5. Mention CDAOError in DEPRECATED.rst

    peterjc committed May 23, 2017
  6. TravisCI: Use flake8-blind-except

    Adds:
    
    B901 blind except: statement
    peterjc committed May 22, 2017
  7. flake8: special case where B901 blind except unavoidable

    At least, I was unable to work out how to catch this on Jython
    as far as I can recall.
    peterjc committed May 22, 2017
  8. Can now expect os.path.relpath to be present.

    We now require Python 2.7 onwards.
    peterjc committed May 26, 2017
  9. Explain how to run flake8 and rst-lint

    peterjc committed on GitHub May 26, 2017
Commits on May 25, 2017
  1. Don't want SimCoal files in MANIFEST.in

    This part of Bio.PopGen was removed, see #1254
    peterjc committed on GitHub May 25, 2017
  2. TravisCI: Use pre-compiled Genepop from BioConda

    peterjc committed May 24, 2017
  3. TravisCI: Install GenePop

    peterjc committed May 24, 2017
Commits on May 24, 2017
  1. Docstring tweaks to make pydocstyle happy.

    peterjc committed May 24, 2017
  2. Fixed a typo

    peterjc committed May 24, 2017
  3. Add NeuralNetwork docstring and fix RST indentation

    Squashed commit of pull request #1252.
    souravsingh committed with peterjc May 22, 2017
  4. Thank Tiago; updated DEPRECATED.rst

    See preceeding commits from pull request #1254.
    peterjc committed May 24, 2017
  5. forgotten fdist test file :(

    tiagoantao committed with peterjc May 23, 2017
Commits on May 23, 2017
  1. Disable docstest failing on Windows Python 2.7

    This closes issue #1138
    peterjc committed May 23, 2017
Commits on May 22, 2017
  1. Update warning message for duplicate blast-xml hit IDs

    bow committed with bow May 22, 2017
  2. Update NEWS with blast-xml new kwargs

    bow committed with bow May 22, 2017
  3. Update blast-xml docs

    bow committed with bow May 21, 2017
  4. Add and update public docstrings in Bio.Seq

    Squashed commit of #1251.
    
    Cross reference #1203.
    Gasta88 committed with peterjc May 22, 2017
  5. Add public docstrings to Bio.pairwise2

    Squashed commit of #1249.
    
    Cross reference issue #1203.
    Gasta88 committed with peterjc May 22, 2017
Commits on May 20, 2017
  1. Thank Sourav Singh for docstring work

    peterjc committed on GitHub May 20, 2017