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Commits on Jan 30, 2012
  1. @cmccoy @peterjc

    Add sequence to funny.sth; update tests

    cmccoy committed with peterjc Jan 18, 2012
    Test parsing of Stockholm sequences that end in /x-y, where x or y is
    non-integer.
    
    Updated expected output, sequence counts in test files to match.
Commits on Jun 18, 2011
  1. @cmccoy @peterjc
  2. @cmccoy @peterjc

    Update tests for extended phylip format

    cmccoy committed with peterjc Jun 7, 2011
    * Update expected output for test_AlignIO, test_SeqIO
    * Apply most of the same exceptions affecting the phylip format to
      extended phylip
    * Add a sample extended phylip format-file (primates.phyx, from the
      Bodega Phylogenetics Wiki:
      http://bodegaphylo.wikispot.org/RAxML_Tutorial)
  3. @cmccoy @peterjc

    Trim trailing space

    cmccoy committed with peterjc May 31, 2011
    Remove all trailing whitespace from PhylipIO and related files.
Commits on May 8, 2011
  1. @cmccoy @peterjc

    Show failing sequence ID in PhylipWriter

    cmccoy committed with peterjc May 6, 2011
    * ValueError raised on duplicate sequence ID in PhylipWriter now
      identifies the (possibly truncated) problematic sequence ID
    * Added a simple test.
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