Skip to content
This repository

Jul 07, 2000

  1. did regression test for test_prosite2.py

    jchang authored
  2. *** empty log message ***

    katel authored
  3. *** empty log message ***

    katel authored

Jul 06, 2000

  1. updates on installation

    jchang authored
  2. updated README

    MANIFEST.in now reflects Cayte's new directories
    jchang authored
  3. misc. documentation updates

    jchang authored
  4. Added code to support parsing of Blast output from WWW:

    - Added File.SGMLStripper and File.SGMLHandle to strip SGML tags
    - Added ParserSupport.SGMLStrippingConsumer
    - Added NCBIWWW.BlastParser & tests
    - Misc extensions to NCBIStandalone._BlastConsumer so that it will handle
      WWW data
    jchang authored
  5. adding test files for Cayte's new Enzyme and Fasta2 tests

    jchang authored

Jul 04, 2000

  1. *** empty log message ***

    katel authored
  2. *** empty log message ***

    katel authored

Jul 01, 2000

  1. *** empty log message ***

    katel authored
  2. *** empty log message ***

    katel authored
  3. *** empty log message ***

    katel authored
  4. *** empty log message ***

    katel authored

Jun 30, 2000

  1. added test for multiple databases

    jchang authored

Jun 29, 2000

  1. added cstringfnsmodule.c to the list of extension modules

    jchang authored
  2. new, shorter, implementation for items

    jchang authored

Jun 28, 2000

  1. 28 June 00 Brad

    * Fix to Andrew's FASTA.py so that it imports modules inside the Bio namespace.
    * Fixed setup.py. The ext_modules item in setup.py was missing commas between the tuples so it wouldn't build.
    chapmanb authored

Jun 23, 2000

  1. added patches by Mike Poidinger <Michael.Poidinger@ebioinformatics.com>

    to support parsing of blast results when run against multiple databases.
    jchang authored

Jun 08, 2000

  1. added Cayte's SeqGui app

    jchang authored

Jun 07, 2000

  1. renamed listfns.uniq to listfns.items. name was misleading

    jchang authored
  2. added a module to work with strings

    jchang authored
  3. minor update with argument parsing

    jchang authored

Jun 06, 2000

  1. added listfns and mathfns modules + optimized extension modules

    added kNN classifier
    lots of performance enhancements for the NaiveBayes classifier
    jchang authored
  2. added a section for recording errors from NCBI

    jchang authored
  3. routine updates

    jchang authored
  4. added find_related function

    jchang authored
  5. Medlars format seems to have changed nad is now using tabs

    updated the Parser to handle it.
    fixed minor bug in handling of continuation lines
    jchang authored
  6. bug fix in pmneighbor -- wasn't handling display right

    jchang authored
  7. bug fixes and changes in the multiple alignment code

    jchang authored

May 14, 2000

  1. moved blast function from WWW/NCBI.py to Blast/NCBIWWW.py

    jchang authored
  2. added search_for function

    jchang authored
  3. Fixed bug in RecordParser. Now recognizes '\t' as a valid character

    for line continuations.
    jchang authored
  4. added a test for blast

    jchang authored
  5. oops, shouldn't have added this test file

    jchang authored
Something went wrong with that request. Please try again.