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Commits on Jul 7, 2000
  1. did regression test for test_prosite2.py

    jchang committed Jul 7, 2000
  2. *** empty log message ***

    katel committed Jul 7, 2000
  3. *** empty log message ***

    katel committed Jul 7, 2000
Commits on Jul 6, 2000
  1. updates on installation

    jchang committed Jul 6, 2000
  2. updated README

    jchang committed Jul 6, 2000
    MANIFEST.in now reflects Cayte's new directories
  3. misc. documentation updates

    jchang committed Jul 6, 2000
  4. Added code to support parsing of Blast output from WWW:

    jchang committed Jul 6, 2000
    - Added File.SGMLStripper and File.SGMLHandle to strip SGML tags
    - Added ParserSupport.SGMLStrippingConsumer
    - Added NCBIWWW.BlastParser & tests
    - Misc extensions to NCBIStandalone._BlastConsumer so that it will handle
      WWW data
Commits on Jul 4, 2000
  1. *** empty log message ***

    katel committed Jul 4, 2000
  2. *** empty log message ***

    katel committed Jul 4, 2000
Commits on Jul 1, 2000
  1. *** empty log message ***

    katel committed Jul 1, 2000
  2. *** empty log message ***

    katel committed Jul 1, 2000
  3. *** empty log message ***

    katel committed Jul 1, 2000
  4. *** empty log message ***

    katel committed Jul 1, 2000
Commits on Jun 30, 2000
  1. added test for multiple databases

    jchang committed Jun 30, 2000
Commits on Jun 29, 2000
  1. new, shorter, implementation for items

    jchang committed Jun 29, 2000
Commits on Jun 28, 2000
  1. 28 June 00 Brad

    chapmanb committed Jun 28, 2000
    * Fix to Andrew's FASTA.py so that it imports modules inside the Bio namespace.
    * Fixed setup.py. The ext_modules item in setup.py was missing commas between the tuples so it wouldn't build.
Commits on Jun 23, 2000
  1. added patches by Mike Poidinger <Michael.Poidinger@ebioinformatics.com>

    jchang committed Jun 23, 2000
    to support parsing of blast results when run against multiple databases.
Commits on Jun 8, 2000
  1. added Cayte's SeqGui app

    jchang committed Jun 8, 2000
Commits on Jun 7, 2000
  1. added a module to work with strings

    jchang committed Jun 7, 2000
  2. minor update with argument parsing

    jchang committed Jun 7, 2000
Commits on Jun 6, 2000
  1. added listfns and mathfns modules + optimized extension modules

    jchang committed Jun 6, 2000
    added kNN classifier
    lots of performance enhancements for the NaiveBayes classifier
  2. added a section for recording errors from NCBI

    jchang committed Jun 6, 2000
  3. routine updates

    jchang committed Jun 6, 2000
  4. added find_related function

    jchang committed Jun 6, 2000
  5. Medlars format seems to have changed nad is now using tabs

    jchang committed Jun 6, 2000
    updated the Parser to handle it.
    fixed minor bug in handling of continuation lines
Commits on May 14, 2000
  1. added search_for function

    jchang committed May 14, 2000
  2. Fixed bug in RecordParser. Now recognizes '\t' as a valid character

    jchang committed May 14, 2000
    for line continuations.
  3. added a test for blast

    jchang committed May 14, 2000
  4. oops, shouldn't have added this test file

    jchang committed May 14, 2000