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Commits on Jul 6, 2001
  1. fixed typo

    jchang authored
Commits on Jul 5, 2001
  1. updated __all__ tags for 1.00a2 release

    jchang authored
  2. added info for 1.00a2 release

    jchang authored
  3. updated version number for 1.00a2 release

    jchang authored
    added Clustering package
  4. made fix to FSSP test. Was printing out keys for a dictionary, which

    jchang authored
    can change from time to time.  Now sorts the keys before printing.
  5. added safe_log2 as a convenience function

    jchang authored
  6. ----------------------------------------------------------------------

    idoerg authored
    New test
    Modified Files:
     	test_SubsMat
  7. ----------------------------------------------------------------------

    idoerg authored
    Added Files:
     	test_FSSP
    ----------------------------------------------------------------------
  8. ----------------------------------------------------------------------

    idoerg authored
    New test.
    Modified Files:
     	test_align
    ----------------------------------------------------------------------
  9. ----------------------------------------------------------------------

    idoerg authored
    All test outoput is going to stdout now. No auxilary files.
    Modified Files:
     	test_align.py
    ----------------------------------------------------------------------
  10. ----------------------------------------------------------------------

    idoerg authored
    Removed time stamp, and argv reader. These screw up the regression testing
    Modified Files:
     	test_FSSP.py
    ----------------------------------------------------------------------
Commits on Jul 4, 2001
  1. ----------------------------------------------------------------------

    idoerg authored
    Iddo: Fixed bug in _get_column_info
    Modified Files:
     	AlignInfo.py
    ----------------------------------------------------------------------
  2. ----------------------------------------------------------------------

    idoerg authored
    Iddo: updated test to include _get_column_info and print_info_content from
    module AlignInfo
    Modified Files:
     	test_align.py
    ----------------------------------------------------------------------
Commits on Jul 2, 2001
  1. ----------------------------------------------------------------------

    idoerg authored
    Iddo: added test for the name_filter function
    Modified Files:
     	test_FSSP.py
    ----------------------------------------------------------------------
  2. ----------------------------------------------------------------------

    idoerg authored
    Iddo: Doc update.  Bugfix in name_filter.
    Modified Files:
     	FSSPTools.py
    ----------------------------------------------------------------------
  3. ----------------------------------------------------------------------

    idoerg authored
    changes:
    Iddo: added get_column method
    fixed bug in information content
    added ic_vector attribute.
    added function print_info_content
    
    Modified Files:
     	AlignInfo.py
    ----------------------------------------------------------------------
  4. ----------------------------------------------------------------------

    idoerg authored
    Iddo: Added get_column method.
    Modified Files:
     	Generic.py
    ----------------------------------------------------------------------
  5. ----------------------------------------------------------------------

    idoerg authored
    Added Filtering functions
    Modified Files:
    ----------------------------------------------------------------------
  6. ----------------------------------------------------------------------

    idoerg authored
    Added header class.
    ----------------------------------------------------------------------
Commits on Jul 1, 2001
  1. Moved import guiunittest inside a conditional import, so that we won't

    chapmanb authored
    fail if Tkinter is not installed.
Commits on Jun 28, 2001
  1. backing out statistics code

    jchang authored
  2. documentation updates

    jchang authored
  3. fixed memory leak

    jchang authored
  4. Parser now handles bug where "purification" sometimes got split

    jchang authored
    in the MH lines.
  5. added an optional parameter to RequestLimiter.wait to override

    jchang authored
    default delay
Commits on Jun 27, 2001
  1. *** empty log message ***

    katel authored
Commits on Jun 25, 2001
  1. *** empty log message ***

    katel authored
Commits on Jun 24, 2001
  1. *** empty log message ***

    katel authored
Commits on Jun 19, 2001
Commits on Jun 13, 2001
  1. ----------------------------------------------------------------------

    idoerg authored
    Bugfix in mult_align
    Modified Files:
     	FSSPTools.py
     ----------------------------------------------------------------------
Commits on Jun 7, 2001
  1. ----------------------------------------------------------------------

    idoerg authored
    FSSPTools: for now two functions: filter and mult_align
    Added Files:
     	FSSPTools.py
    ----------------------------------------------------------------------
  2. ----------------------------------------------------------------------

    idoerg authored
    Definitions for reading a flat flie format, and the FSSP format
    Added Files:
     	fssp_rec.py
    ----------------------------------------------------------------------
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