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Commits on Sep 4, 2001
  1. added Ceci to CONTRIB

    jchang
    jchang committed Sep 4, 2001
    updated Thomas' email address
  2. updated version fro 1.00a3 release

    jchang
    jchang committed Sep 4, 2001
  3. updated the __all__ variable in each package

    jchang
    jchang committed Sep 4, 2001
  4. added indexesof function

    jchang
    jchang committed Sep 4, 2001
Commits on Aug 28, 2001
  1. new regression tests for UndoHandle.read

    jchang
    jchang committed Aug 28, 2001
  2. format updates in search_for.ResultParser

    jchang
    jchang committed Aug 28, 2001
Commits on Aug 19, 2001
  1. *** empty log message ***

    katel
    katel committed Aug 19, 2001
  2. CVt

    katel
    katel committed Aug 19, 2001
    :
    :q
    : --------------------------------------------------------------------t
    -
Commits on Aug 14, 2001
  1. Check for produced .aln file before parsing, and raise a useful

    chapmanb
    chapmanb committed Aug 14, 2001
    debuggin error if the file is not present.
Commits on Aug 11, 2001
  1. Added some documentation to the module docstring.

    tarjei
    tarjei committed Aug 11, 2001
    Fixed a type in the Scanner class.
Commits on Aug 10, 2001
  1. *** empty log message ***

    katel
    katel committed Aug 10, 2001
Commits on Aug 9, 2001
  1. *** empty log message ***

    katel
    katel committed Aug 9, 2001
  2. *** empty log message ***

    katel
    katel committed Aug 9, 2001
  3. *** empty log message ***

    katel
    katel committed Aug 9, 2001
Commits on Aug 4, 2001
  1. Fix for test file names -- made the 'ipr' capitalized to match the

    chapmanb
    chapmanb committed Aug 4, 2001
    names of the files.
Commits on Aug 2, 2001
  1. Added Tarjei Mikkelsen.

    tarjei
    tarjei committed Aug 2, 2001
  2. Updated test output to reflect that gene names are no

    tarjei
    tarjei committed Aug 2, 2001
    longer kept.
  3. Changed Enzyme parser to throw away gene names,

    tarjei
    tarjei committed Aug 2, 2001
    so that only the KEGG id is kept.
Commits on Aug 1, 2001
  1. added new modules to do pairwise alignments

    jchang
    jchang committed Aug 1, 2001
  2. fixed a possible bug in test_prodoc.py where it was printing some

    jchang
    jchang committed Aug 1, 2001
    text based on the length of a string.  I suspect this may have different
    counts because of line break differences between platforms, and may
    be causing a test failure on windows.
  3. Added KEGG modules to the installed stuff

    chapmanb
    chapmanb committed Aug 1, 2001
  4. Changes to test_align for changes to Clustalw object, and updates for…

    chapmanb
    chapmanb committed Aug 1, 2001
    … changes in how Gapped sequences are printed out.
  5. patches from Davide Marchignoli; fix failure to return correct

    chapmanb
    chapmanb committed Aug 1, 2001
    alphabet, additions to MultipleAlignCL, erroneous print statements
  6. fix from Davide Marchignoli, get rid of forgotten self in converged

    chapmanb
    chapmanb committed Aug 1, 2001
    attribute
Commits on Jul 31, 2001
  1. removed references to deprecated Sequence.py

    jchang
    jchang committed Jul 31, 2001
Commits on Jul 30, 2001
  1. Removed UNIX specific file names and replaced with os-generic

    chapmanb
    chapmanb committed Jul 30, 2001
    os.path.join
  2. Added InterPro directory to setup file.

    chapmanb
    chapmanb committed Jul 30, 2001
Commits on Jul 25, 2001
  1. small bugfixes

    thomas
    thomas committed Jul 25, 2001
  2. fixed GC_skew

    thomas
    thomas committed Jul 25, 2001
    added xGC_skew