…irwise centroid-linkage) can now be executed based on the distance matrix only, so without the original gene expression data. This allows the hierarchical clustering routine to be used in cases where the original gene expression data are not available, or in cases where only the distance matrix is well defined. An example might be the clustering of proteins based on the similarity in their shape.
* fixed references to the old website * fixed some import errors and other miscellaneous things I noticed * added the png files to CVS (what the hell, why not) * added a Tutorial.txt file so there is at least something to read if you don't like starting at tex and don't want to build the docs.
* changed internal refs to import EUtils to Bio.EUtils * modified setup.py so DTDs are installed * modified MANIFEST.in to make sure DTDs get packaged * got rid of the executable bit on all files