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Commits on Jul 27, 2003
  1. added locuslink code back in

    jchang committed Jul 27, 2003
  2. updated version for new release

    jchang committed Jul 27, 2003
  3. updated NEWS to reflect changes for new release

    jchang committed Jul 27, 2003
  4. updated news for new release

    jchang committed Jul 27, 2003
  5. updating news in preparation for release

    jchang committed Jul 27, 2003
  6. added ImportError to skip these tests

    the tests were failing for people without databases
    jchang committed Jul 27, 2003
Commits on Jul 26, 2003
  1. committed Greg Tyrelle's fixes to the README file

    /etc/passwd contains comments in Max OS X
    jchang committed Jul 26, 2003
Commits on Jul 23, 2003
Commits on Jul 18, 2003
  1. C Clustering Library version 1.22. Hierarchical clustering (except pa…

    …irwise
    
    centroid-linkage) can now be executed based on the distance matrix only, so
    without the original gene expression data. This allows the hierarchical
    clustering routine to be used in cases where the original gene expression data
    are not available, or in cases where only the distance matrix is well defined.
    An example might be the clustering of proteins based on the similarity in their
    shape.
    mdehoon committed Jul 18, 2003
Commits on Jul 2, 2003
  1. committed Yves Bastide's patch to insert the build path into the

    sys.path
    jchang committed Jul 2, 2003
Commits on Jun 24, 2003
  1. updated Andreas Kuntazagk's fixes

    jchang committed Jun 24, 2003
Commits on Jun 21, 2003
  1. backed out Andreas Kuntzagk's fixes

    jchang committed Jun 21, 2003
Commits on Jun 20, 2003
Commits on Jun 17, 2003
Commits on Jun 15, 2003
  1. Updates to the documentation:

    * fixed references to the old website
    * fixed some import errors and other miscellaneous things I noticed
    * added the png files to CVS (what the hell, why not)
    * added a Tutorial.txt file so there is at least something to read
    if you don't like starting at tex and don't want to build the docs.
    chapmanb committed Jun 15, 2003
  2. C Clustering Library version 1.21.

    Added the city-block distance as a measure of similarity between gene
    expression data.
    mdehoon committed Jun 15, 2003
Commits on Jun 14, 2003
  1. Raise import error on GFF test if not configured

    chapmanb committed Jun 14, 2003
Commits on Jun 13, 2003
  1. *** empty log message ***

    idoerg committed Jun 13, 2003
  2. *** empty log message ***

    idoerg committed Jun 13, 2003
  3. Changed my email address

    idoerg committed Jun 13, 2003
  4. force require MySQLdb

    grouse committed Jun 13, 2003
  5. Speed fixes and cleanup for EventGenerator

    chapmanb committed Jun 13, 2003
  6. *** empty log message ***

    jchang committed Jun 13, 2003
  7. added some more people who contributed patches

    jchang committed Jun 13, 2003
  8. added yu huang's patch for tblastn support

    jchang committed Jun 13, 2003
  9. Add contributions from Sebastian Bassi:

    * documentation fix for Clustalw
    * new gap_consensus function for AlignInfo which gives a consensus sequence
    that can have gaps in it.
    chapmanb committed Jun 13, 2003
  10. Fixes to imported EUtils to get it working happily with Bio:

    * changed internal refs to import EUtils to Bio.EUtils
    * modified setup.py so DTDs are installed
    * modified MANIFEST.in to make sure DTDs get packaged
    * got rid of the executable bit on all files
    chapmanb committed Jun 13, 2003
  11. Initial import of EUtils into Biopython

    dalke committed Jun 13, 2003
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