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Commits on Jul 27, 2003
  1. added locuslink code back in

    jchang authored
  2. updated version for new release

    jchang authored
  3. updated news for new release

    jchang authored
  4. updating news in preparation for release

    jchang authored
  5. added ImportError to skip these tests

    jchang authored
    the tests were failing for people without databases
Commits on Jul 26, 2003
  1. committed Greg Tyrelle's fixes to the README file

    jchang authored
    /etc/passwd contains comments in Max OS X
Commits on Jul 23, 2003
Commits on Jul 18, 2003
  1. C Clustering Library version 1.22. Hierarchical clustering (except pa…

    mdehoon authored
    …irwise
    
    centroid-linkage) can now be executed based on the distance matrix only, so
    without the original gene expression data. This allows the hierarchical
    clustering routine to be used in cases where the original gene expression data
    are not available, or in cases where only the distance matrix is well defined.
    An example might be the clustering of proteins based on the similarity in their
    shape.
Commits on Jul 2, 2003
Commits on Jun 24, 2003
  1. updated Andreas Kuntazagk's fixes

    jchang authored
Commits on Jun 21, 2003
  1. backed out Andreas Kuntzagk's fixes

    jchang authored
Commits on Jun 20, 2003
Commits on Jun 17, 2003
Commits on Jun 15, 2003
  1. Updates to the documentation:

    chapmanb authored
    * fixed references to the old website
    * fixed some import errors and other miscellaneous things I noticed
    * added the png files to CVS (what the hell, why not)
    * added a Tutorial.txt file so there is at least something to read
    if you don't like starting at tex and don't want to build the docs.
  2. C Clustering Library version 1.21.

    mdehoon authored
    Added the city-block distance as a measure of similarity between gene
    expression data.
Commits on Jun 14, 2003
  1. Raise import error on GFF test if not configured

    chapmanb authored
Commits on Jun 13, 2003
  1. *** empty log message ***

    idoerg authored
  2. *** empty log message ***

    idoerg authored
  3. Changed my email address

    idoerg authored
  4. force require MySQLdb

    grouse authored
  5. Speed fixes and cleanup for EventGenerator

    chapmanb authored
  6. *** empty log message ***

    jchang authored
  7. added some more people who contributed patches

    jchang authored
  8. added yu huang's patch for tblastn support

    jchang authored
  9. Add contributions from Sebastian Bassi:

    chapmanb authored
    * documentation fix for Clustalw
    * new gap_consensus function for AlignInfo which gives a consensus sequence
    that can have gaps in it.
  10. Fixes to imported EUtils to get it working happily with Bio:

    chapmanb authored
    * changed internal refs to import EUtils to Bio.EUtils
    * modified setup.py so DTDs are installed
    * modified MANIFEST.in to make sure DTDs get packaged
    * got rid of the executable bit on all files
  11. Initial import of EUtils into Biopython

    dalke authored
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