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Commits on Oct 19, 2003
  1. int has_prefix returned NULL. Now returns 0.

    jchang committed
  2. updated files for 1.23 release

    jchang committed
Commits on Oct 17, 2003
  1. Fixed spelling error "is you are unsure" ==> "if you are unsure"

    mdehoon committed
    Updated ReportLab download location.
Commits on Oct 15, 2003
  1. now includes files in Bio/Cluster, regardless of whether they will

    jchang committed
    be installed later
Commits on Oct 10, 2003
  1. *** empty log message ***

    nisse committed
  2. *** empty log message ***

    nisse committed
  3. *** empty log message ***

    nisse committed
  4. *** empty log message ***

    nisse committed
  5. *** empty log message ***

    nisse committed
  6. *** empty log message ***

    nisse committed
  7. Forgot makefile.

    nisse committed
  8. Added mmCIF support.

    nisse committed
  9. C/lex code to parse mmCIF files.

    nisse committed
  10. added rule to include Bio/Cluster/*.c

    jchang committed
    they weren't getting included
  11. updated information for 1.22 release

    jchang committed
Commits on Oct 9, 2003
  1. In Python 2.3.2, the current directory '' is not included in the path.

    grouse committed
    Instead the current directory at the time of Python startup is
    included in the path. This breaks test which relies on the
    first behavior to import the tests.
  2. Iterator now allows blank lines between files

    jchang committed
    Iterator is now a Python 2.0 iterator
  3. two fixes:

    jchang committed
      - now NCBIDictionary returns 1 sequence by default
      - NCBIDictionary is smarter about guessing the format
  4. now distributes _KDTree.C file

    jchang committed
Commits on Sep 25, 2003
Commits on Sep 23, 2003
  1. Updated water command for new version

    chapmanb committed
Commits on Sep 19, 2003
  1. Check in updates from Yves Bastide. Thanks!

    chapmanb committed
Commits on Sep 16, 2003
  1. committed Michiel de Hoon's fix to get the dtds installed in the right

    jchang committed
    place for windows
Commits on Sep 15, 2003
  1. fixed installation of Bio/EUtils/DTDs

    jchang committed
    now packages them in a "data_files"
Commits on Sep 13, 2003
  1. added release notes for next release

    jchang committed
  2. now installs Martel and doesn't complain about it

    jchang committed
    will install Bio.Cluster only if Numeric is present
  3. updated test for Python 2.3

    jchang committed
Commits on Sep 11, 2003
Commits on Sep 7, 2003
  1. C Clustering Library version 1.23. Bug fix in the palcluster routine in

    mdehoon committed
    src/cluster.c. This is the pairwise average-linkage hierarchical clustering
    code. The last row in the distance matrix was not being copied.
Commits on Sep 4, 2003
  1. added Peter Slickers' patch to change apply() to extended call syntax.

    jchang committed
    apply() is deprecated in Python 2.3 and runs really slowly
Commits on Sep 2, 2003
  1. decode was not decoding match_fn. Now it does.

    jchang committed
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