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Commits on Oct 19, 2003
  1. int has_prefix returned NULL. Now returns 0.

    jchang committed Oct 19, 2003
  2. updated files for 1.23 release

    jchang committed Oct 19, 2003
Commits on Oct 17, 2003
  1. Fixed spelling error "is you are unsure" ==> "if you are unsure"

    Updated ReportLab download location.
    mdehoon committed Oct 17, 2003
Commits on Oct 15, 2003
  1. now includes files in Bio/Cluster, regardless of whether they will

    be installed later
    jchang committed Oct 15, 2003
Commits on Oct 10, 2003
  1. *** empty log message ***

    nisse committed Oct 10, 2003
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    nisse committed Oct 10, 2003
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    nisse committed Oct 10, 2003
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    nisse committed Oct 10, 2003
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    nisse committed Oct 10, 2003
  6. *** empty log message ***

    nisse committed Oct 10, 2003
  7. Forgot makefile.

    nisse committed Oct 10, 2003
  8. Added mmCIF support.

    nisse committed Oct 10, 2003
  9. C/lex code to parse mmCIF files.

    nisse committed Oct 10, 2003
  10. added rule to include Bio/Cluster/*.c

    they weren't getting included
    jchang committed Oct 10, 2003
  11. updated information for 1.22 release

    jchang committed Oct 10, 2003
Commits on Oct 9, 2003
  1. In Python 2.3.2, the current directory '' is not included in the path.

    Instead the current directory at the time of Python startup is
    included in the path. This breaks setup.py test which relies on the
    first behavior to import the tests.
    grouse committed Oct 9, 2003
  2. Iterator now allows blank lines between files

    Iterator is now a Python 2.0 iterator
    jchang committed Oct 9, 2003
  3. two fixes:

      - now NCBIDictionary returns 1 sequence by default
      - NCBIDictionary is smarter about guessing the format
    jchang committed Oct 9, 2003
  4. now distributes _KDTree.C file

    jchang committed Oct 9, 2003
Commits on Sep 25, 2003
Commits on Sep 23, 2003
  1. Updated water command for new version

    chapmanb committed Sep 23, 2003
Commits on Sep 19, 2003
  1. Check in updates from Yves Bastide. Thanks!

    chapmanb committed Sep 19, 2003
Commits on Sep 16, 2003
  1. committed Michiel de Hoon's fix to get the dtds installed in the right

    place for windows
    jchang committed Sep 16, 2003
Commits on Sep 15, 2003
  1. fixed installation of Bio/EUtils/DTDs

    now packages them in a "data_files"
    jchang committed Sep 15, 2003
Commits on Sep 13, 2003
  1. added release notes for next release

    jchang committed Sep 13, 2003
  2. now installs Martel and doesn't complain about it

    will install Bio.Cluster only if Numeric is present
    jchang committed Sep 13, 2003
  3. updated test for Python 2.3

    jchang committed Sep 13, 2003
Commits on Sep 11, 2003
Commits on Sep 7, 2003
  1. C Clustering Library version 1.23. Bug fix in the palcluster routine in

    src/cluster.c. This is the pairwise average-linkage hierarchical clustering
    code. The last row in the distance matrix was not being copied.
    mdehoon committed Sep 7, 2003
Commits on Sep 4, 2003
  1. added Peter Slickers' patch to change apply() to extended call syntax.

    apply() is deprecated in Python 2.3 and runs really slowly
    jchang committed Sep 4, 2003
Commits on Sep 2, 2003
  1. decode was not decoding match_fn. Now it does.

    jchang committed Sep 2, 2003