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Commits on Feb 16, 2004
  1. Added beginnings of a martel grammer for hmmpfam

    chapmanb committed
  2. Updates in preparation for release 1.24.

    chapmanb committed
  3. Added function suggested by James Casbon to Bio.Blast.Record. It allows

    chapmanb committed
    multiple alignments to be retrieved as Bio.Align.Generic.Alignment objects.
    Added relevant tests.
    Updated README file looking at release time.
Commits on Feb 15, 2004
  1. Added possible FASTA type to output types

    chapmanb committed
Commits on Feb 13, 2004
Commits on Feb 12, 2004
  1. Updated prosite2 output for cc_site change checking in by Jeff in Pro…

    chapmanb committed
    … revision 1.8
  2. Updated BioSQL so it works again with the current CVS schema. All tests

    chapmanb committed
    now pass for both MySQL and PostgreSQL. In the process made changes to
    GenBank so that mRNA in GenBank (which is really cDNA, not RNA) now has
    a strand set in the features (instead of None).
Commits on Feb 11, 2004
  1. fixed bug in _my_urlencode. operator.isMappingType behaves differently

    jchang committed
    for lists in Python 2.2 and Python2.3.
Commits on Feb 6, 2004
  1. Added new ace parser from Frank

    chapmanb committed
Commits on Feb 5, 2004
  1. Added Sequencing directory to packages

    chapmanb committed
  2. Added Leighton to the contributors file

    chapmanb committed
Commits on Feb 4, 2004
Commits on Feb 3, 2004
Commits on Feb 2, 2004
Commits on Jan 27, 2004
  1. Output of the test routine for Bio.Cluster.

    mdehoon committed
  2. Test routine for Bio.Cluster.

    mdehoon committed
  3. C Clustering Library 1.24. Added a k-medoids function (k-means type r…

    mdehoon committed
    that can be applied to a distance matrix directly) and a routine to divide a
    hierarchical clustering result into k clusters. The k-means clustering routine
    can now be run from a user-specified initial clustering.
Commits on Jan 26, 2004
  1. Allow fasta to handle when a record at the end of the file ends witho…

    chapmanb committed
    …ut a newline
  2. Add Frank for Phred and Ace parsers

    chapmanb committed
Commits on Jan 23, 2004
  1. Fixed lsf-only problem

    grouse committed
Commits on Jan 21, 2004
  1. Adding NMR files kindly contributed by Bob Bussell

    chapmanb committed
Commits on Jan 16, 2004
  1. removed reference to internal version of psw

    grouse committed
  2. Fixed typo in the mxTextTools download link -- thanks to Tom Elliott …

    chapmanb committed
    …for reporting it
  3. Fixed check for different outputs

    chapmanb committed
Commits on Jan 15, 2004
  1. Adding Bio.Wise to the distribution

    grouse committed
  2. too many tabs causing SyntaxError

    grouse committed
  3. now unittests are actually getting run

    grouse committed
  4. removed debugging code

    grouse committed
  5. Unit tests were not being run from

    grouse committed
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