Permalink
Commits on Mar 22, 2008
  1. More news for release 1.45.

    mdehoon committed Mar 22, 2008
Commits on Mar 21, 2008
  1. Biopython release 1.45.

    mdehoon committed Mar 21, 2008
  2. Add some news for the 1.45 release.

    mdehoon committed Mar 21, 2008
  3. Deprecated Bio.biblio as no one seems to use it, and its doesn't work…

    peterjc committed Mar 21, 2008
    … anymore. At the very least the URLs for the EBI SOAP API have changed.
  4. Added missing copyright and licence header, explicitly stating that w…

    peterjc committed Mar 21, 2008
    …hile these files are part of Biopython, BioSQL itself (database schema and scipts) is available and licensed separately.
Commits on Mar 20, 2008
Commits on Mar 19, 2008
Commits on Mar 16, 2008
  1. Fixes a disagreement with the GenBank parser on how to store the NCBI…

    peterjc committed Mar 16, 2008
    … taxonomy ID and the taxonomy lineage (list of species) in the annotations dictionary of a SeqRecord.
  2. Minor updates on parsing GenBank files, e.g. "organism" versus "sourc…

    peterjc committed Mar 16, 2008
    …e" for species names.
Commits on Mar 15, 2008
  1. Adds missing licence headers and a tiny bit of documentation with lin…

    peterjc committed Mar 15, 2008
    …ks to the wise2 website.
Commits on Mar 14, 2008
  1. Be a little less strict when checking the sequence alphabet matches t…

    peterjc committed Mar 14, 2008
    …he translation table alphabet. Resolves bug 2437
  2. Remove deprecated functions from Bio.Entrez, and update the deprecati…

    mdehoon committed Mar 14, 2008
    …on warning here.
Commits on Mar 7, 2008
  1. C Clustering Library 1.38. Renamed DataFile to Record, and added a re…

    mdehoon committed Mar 7, 2008
    …ad function.
Commits on Feb 25, 2008
  1. Dos/Unix line endings

    peterjc committed Feb 25, 2008
  2. Changing bottle.png binary status - initial remove

    tiagoantao committed Feb 25, 2008
  3. Moving Bio/Entrez.py to Bio/Entrez/__init__.py.

    mdehoon committed Feb 25, 2008
  4. Moving Bio/Entrez.py to Bio/Entrez/__init__.py.

    mdehoon committed Feb 25, 2008
  5. Moving Bio/Entrez.py to Bio/Entrez/__init__.py.

    mdehoon committed Feb 25, 2008
  6. Resurrecting Bio.Entrez. The __init__.py file you see here is ancient…

    mdehoon committed Feb 25, 2008
    …, and is
    
    about to be replaced by what is currently in Bio/Entrez.py.
Commits on Feb 24, 2008
Commits on Feb 23, 2008
  1. Documentation for Bio.Entrez added.

    mdehoon committed Feb 23, 2008
Commits on Feb 17, 2008
  1. Conforming to NCBI requirements.

    mdehoon committed Feb 17, 2008
Commits on Feb 15, 2008
  1. Allow batch-processing (for example fetching records for a list of pu…

    mdehoon committed Feb 15, 2008
    …bmed ids).
  2. Add missing functions from Entrez, and update the documentation of the

    mdehoon committed Feb 15, 2008
    existing functions.
  3. Using modern Python.

    mdehoon committed Feb 15, 2008
  4. Moving Bio.WWW.NCBI to Bio.Entrez; Bio.WWW.NCBI is deprecated, Bio.En…

    mdehoon committed Feb 15, 2008
    …trez will
    
    be updated and further developed.
  5. Moving Bio.WWW.NCBI to Bio.Entrez. Bio.WWW.NCBI will be deprecated;

    mdehoon committed Feb 15, 2008
    Bio.Entrez will be updated and further developed.
Commits on Feb 1, 2008
  1. Deprecating the Bio.Blast.NCBIXML.BlastParser.parse method in favor of

    mdehoon committed Feb 1, 2008
    the Bio.Blast.NCBIXML.parse function.