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Commits on Jun 23, 2009
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    Fixed typo in manifest file

    peterjc authored
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    Implement __contains__ for using the in keyword with a Seq object (Bu…

    peterjc authored
    …g 2853). Added comment about comparison methods (see also section in the tutorial)
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Commits on Jun 22, 2009
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    Update to Entrez chapter - Talk about the FieldList information from …

    peterjc authored
    …EInfo and how it helps in ESearch
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  4. Allow annotations, letter_annotations in SeqRecords. Allow qualifiers…

    chapmanb authored
    … and sub_features to SeqFeatures: Bug 2841.
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    Switched python to Python. Fixed a few typos or references related to…

    peterjc authored
    … the new SeqRecord chapter
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    Extend the new doctest to cover the Solexa output too (avoiding the i…

    peterjc authored
    …ssue of mapping a PHRED score of zero)
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Commits on Jun 21, 2009
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Commits on Jun 19, 2009
  1. @peterjc
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    Use Seq methods instead of deprecated Bio.Translate, all old tests re…

    peterjc authored
    …tained except for the back translation
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    Cope with newline-newline place holder page while waiting for BLAST r…

    peterjc authored
    …esults, report and fix from Cymon Cox via mailing list
Commits on Jun 18, 2009
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    Moved Bio.Translate import within the deprecated function that uses i…

    peterjc authored
    …t to avoid the Bio.Translate deprecation warning when importing Bio.SeqUtils
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  6. Converting this to a unittest-type test.

    mdehoon authored
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    Deprecating Bio.Translate and Bio.Transcribe which were declared obso…

    peterjc authored
    …lete in Biopyton 1.49 (use Bio.Seq instead)
Commits on Jun 17, 2009
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