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Commits on Jan 4, 2015
  1. @peterjc

    PEP8 white space in Tests

    peterjc authored
    autopep8 --select E225,E226,E261,E302 -i Tests/*.py
Commits on Nov 16, 2014
  1. @carlosp420 @peterjc

    PEP8 fixes rest of test files

    carlosp420 authored peterjc committed
Commits on Oct 27, 2014
  1. @peterjc

    autopep8 E265 - Format block comments.

    peterjc authored
    $ autopep8 --version
    autopep8 1.0.4
    $ autopep8 -r -i --select E265 ...
  2. @peterjc

    autopep8 E261 - Fix spacing after comment hash

    peterjc authored
    $ autopep8 --version
    autopep8 1.0.4
    $ autopep8 -r -i --select E261 ...
Commits on Oct 20, 2014
  1. @cbrueffer
  2. @cbrueffer
Commits on Nov 3, 2013
  1. @peterjc

    Use basestring from Bio._py3k

    peterjc authored
    The goal here is to be able to use the old Python 2
    style 'basestring' under both Python 2 and Python 3,
    and thus avoids needing to use the 2to3 basestring
    fixer, bringing us closer to not needing 2to3 at all.
  2. @peterjc
Commits on Oct 5, 2013
  1. @peterjc

    Apply 2to3 ws_comma fixer (white space changes)

    peterjc authored
    $ 2to3 --no-diffs -n -w -f ws_comma Bio BioSQL Tests Doc Scripts
Commits on Aug 29, 2013
  1. @chrismit
Commits on Feb 7, 2013
  1. @peterjc
  2. @peterjc
  3. @peterjc

    CompoundLocation half done, created as well as sub_features

    peterjc authored
    This modifies the GenBank/EMBL parser and BioSQL loader to create
    the CompoundLocation as part of creating the SeqFeature.
    
    NOTE: Need to examine how the location operator (join, order, etc)
    should be stored in BioSQL, and what order is used for the location
    parts in BioSQL (by the BioPerl loader at least).
Commits on Dec 6, 2012
  1. @cbrueffer
  2. @cbrueffer
Commits on Dec 5, 2012
  1. @cbrueffer @peterjc
  2. @cbrueffer @peterjc

    Distinguish continuation lines from the next logical line (PEP8 E125).

    cbrueffer authored peterjc committed
    Peter: Merged four of Christian's commits into one as requested
Commits on Dec 4, 2012
  1. @cbrueffer
Commits on Sep 4, 2012
  1. @bow @peterjc

    Updates all unchanged Bio.Seq.tostring() to str(Bio.Seq)

    bow authored peterjc committed
Commits on Nov 29, 2010
  1. @peterjc
Commits on Oct 5, 2010
  1. @peterjc
Commits on Jul 26, 2010
  1. @peterjc
Commits on Jul 15, 2010
  1. @peterjc
Commits on Jul 5, 2010
  1. @peterjc
Commits on Apr 2, 2010
  1. @peterjc

    Adding get_raw method to Bio.SeqIO.index() dictionary class (see Bug …

    peterjc authored
    …3000 and mailing list discussion)
Commits on Dec 9, 2009
  1. @chapmanb
Commits on Nov 11, 2009
  1. @peterjc

    No code changes. Removing white space before ':' character to match P…

    peterjc authored
    …EP8. Added a few missing license statements too.
Commits on Sep 30, 2009
  1. @peterjc

    Adjust comment checking to tollerate white space variation (now that …

    peterjc authored
    …we write COMMENT block in SeqIO GenBank output)
Commits on Sep 28, 2009
  1. @peterjc
Commits on Jun 3, 2009
  1. @peterjc
Commits on Jun 1, 2009
  1. @peterjc

    Unit tests and a fix for an issue with loading a DBSeqRecord into Bio…

    peterjc authored
    …SQL where references lack a location (Bug 2840). Based on a patch from Cymon Cox.
Commits on May 23, 2009
  1. @peterjc
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